Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E03
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   1.8  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   2.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   4.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   5.6  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   7.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   9.7  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   9.7  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = +1

Query: 271 CRLCLNKSSFGTSIFGAAPDDETNISIT-SKIAECLELRIDPND--GLPGRICYKCLFKV 441
           C   LN SS+     G      TN  I+ +K++E   L +      G P RIC   LF  
Sbjct: 656 CTEMLNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLNVQTVSVKGFPRRICSNSLFYF 715

Query: 442 EKCSKFKLQCIQSENRLKQITKQYNE 519
             C + +      E RL    + Y +
Sbjct: 716 VLCMQLEESIGTQEQRLLSFLRVYEK 741


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +1

Query: 10  RTSPQLLLRIEQLRSASRQPPCTKRHQVFLIIVNYSL*ISF*KQYKVYVPSFVLYVCTA 186
           RTS   ++ +  L++    P  +  H+  L+ +   +  S  +Q++VYVPSFV ++ +A
Sbjct: 592 RTSSDQIMNL-LLQTMQTAPKQSVVHEDVLLAIGAMM-NSLEEQFEVYVPSFVPFLSSA 648


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 399  VIRVNS*FQTFSYFRGYGYICFVVRRCPEY*GTKRAL 289
            +I ++  F  ++   GYG IC  + +C +Y G    L
Sbjct: 1101 IIPLSDLFNNYADPLGYGEICLSIFQCADYRGINEIL 1137


>SPBC28E12.03 |rga4||GTPase activating protein
            Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 295  SSCSSKDDTGRGSLLLYRNLPFCAQS*IETF--KVTALLQYKHITQMTAHRLCIVF 134
            ++C+S  D   G +++ ++LP      ++     +  +  Y H  +MT+  L +VF
Sbjct: 842  ANCASFQDKLDGFIMVIKSLPPAHAEILQLIIRHLARVAAYSHANRMTSKNLAVVF 897


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 386 IRSSRHSAILEVMDIFVSSS 327
           +R SRH  ++E++D+F + S
Sbjct: 62  LRESRHDNVIELVDVFSTKS 81


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 235 EDSYIIANFHALCRLCLNKSSFGTSIFG 318
           E S +  +   LC + L+KSSFG S FG
Sbjct: 781 EGSVLFDDGELLCGI-LDKSSFGASAFG 807


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 331 DETNISITSKIAECLELRIDPNDGL 405
           D   IS  S   E +  R+DPN GL
Sbjct: 142 DTKKISAVSTYFESMPYRVDPNTGL 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,039
Number of Sequences: 5004
Number of extensions: 45475
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)