Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E03
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    27   7.5  
12_01_0533 - 4202835-4203031,4203826-4203995,4204952-4205001,420...    27   9.9  
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    27   9.9  
04_04_0547 - 26152892-26153194,26153248-26153329,26153349-261537...    27   9.9  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    27   9.9  
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430...    27   9.9  

>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 367 ECLELRIDPNDGLPGRICYKCLFKVEK 447
           + L   + PN G P R+C  C  K+ K
Sbjct: 670 KALRAALSPNPGKPYRVCDSCYLKLSK 696


>12_01_0533 -
           4202835-4203031,4203826-4203995,4204952-4205001,
           4205085-4205459
          Length = 263

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 415 ICYKCLFKVEKCSKFKLQCIQSENRLKQITKQYNE 519
           IC++ L + +K    + QC   EN +K+  KQY E
Sbjct: 93  ICHQLLAQGQK-HVIRTQCKSKENHVKENIKQYKE 126


>07_03_1147 + 24349811-24350161,24351031-24351366,24353260-24353376,
            24353585-24353647,24354066-24354139,24354216-24354306,
            24354791-24354850,24355270-24355462,24356242-24356522,
            24357435-24357536,24357664-24357774,24358410-24358475,
            24358562-24358660,24358757-24358788,24359171-24359274,
            24359380-24359507,24359625-24359756,24360051-24360359,
            24360887-24361071,24361161-24361263,24361407-24361552,
            24361748-24361827,24361901-24362103
          Length = 1121

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 409  GRICYKCLFKVEK--CSKFKLQCIQSENRLKQITKQYNE 519
            GR   + LF++E   CSK KL C +    ++ + K+  E
Sbjct: 974  GRFARQALFEIEHGICSKCKLDCHELVKNIRPLCKKKRE 1012


>04_04_0547 -
           26152892-26153194,26153248-26153329,26153349-26153707,
           26154366-26154404,26154998-26155168,26155651-26155725,
           26156858-26157055,26157208-26157402
          Length = 473

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 394 NDGLPGRICYKCLFKVEKCSKFKLQCIQSENRLKQITKQ 510
           NDG  G++C K L K     + K   I  +  L Q TKQ
Sbjct: 421 NDGDGGKVCIKVLVKKGHKQQIKEMFIPGDCSLVQSTKQ 459


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 93  FFNNSKLFIVN*FLKTIQSLCAVICVICLYC 185
           F+N + +  +  F    Q  C VIC  CL C
Sbjct: 492 FWNGNSIIGILKFAPLSQQTCPVICFACLMC 522


>01_05_0487 +
           22641133-22642182,22642276-22642863,22642961-22643068,
           22643582-22643692,22643784-22643849,22644858-22644917,
           22644990-22645119,22645159-22645547,22645783-22645902,
           22645957-22646022,22646190-22646255
          Length = 917

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 283 LNKSSFGTSIFGAAPDDETNISITSKIAECLEL--RIDPN 396
           L  S  GTS+F   P D+   S+   +AE + L  RID N
Sbjct: 663 LEHSVAGTSLFVVQPGDDQEKSVNKAMAEMVVLMNRIDKN 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,387,212
Number of Sequences: 37544
Number of extensions: 277806
Number of successful extensions: 574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)