Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E03
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC006717-2|AAK84582.1|  136|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated...    27   8.9  
AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated...    27   8.9  
AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated...    27   8.9  

>U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical
           protein F13H8.11 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +1

Query: 247 IIANFHALCRLCLNKSSFGTSIFG-----AAPDDETNI-SITSKIAECLELRIDPNDGLP 408
           I    + LC +C N+++FG   FG     A    +TN+  +   I   + ++I       
Sbjct: 187 IFIGHNDLCNICNNETTFGPETFGKSLHSALTIIQTNVPKVFVNIMPPINVKIHSQAHKL 246

Query: 409 GRICYKCLFKVEKCSKFKLQCIQSENRLKQITKQYNEIDE 528
            + C     K   C  F+L   + +N  KQ  +Q NE+ E
Sbjct: 247 SKFCEFSHRKTCSCI-FELNEKEYQNIKKQFDEQLNEVVE 285


>AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical
           protein Y43F4B.7 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 150 LCAVICVICLYCRSAVTLKVSI*DCAQNGRFL 245
           L  +IC+ICLYC   V        C +NGR L
Sbjct: 85  LTVLICLICLYCMRQVVFAAHF-VCNRNGRDL 115


>AC006717-2|AAK84582.1|  136|Caenorhabditis elegans Hypothetical
           protein Y14H12A.1 protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 102 NSKLFIVN*FLKTIQSLCAVICVICLYCRSAVTLKV 209
           +S + I+  FL  + S+C +  +IC+ C S+   K+
Sbjct: 38  SSIMMIMAFFLAILVSICVIFSLICIMCHSSRWSKI 73


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 147 SLCAVICVICLYCRSAVTLKVSI-*DCAQNGRFLYNSKL 260
           S+C V C+I ++C       +S    C     F+YN+ +
Sbjct: 147 SICTVSCIIAMFCSHIFFFMISFGLGCGVGMSFIYNAAI 185


>AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated
           protein 23, isoform b protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 421 YKCLFKVEKCSKFKLQCIQSENRLKQITKQYNEIDET 531
           + C+FK+E+C + +++ I   +RL + TK    + ET
Sbjct: 268 HNCMFKLEECDREEIEAI--TDRLTKRTKTVQVVVET 302


>AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated
           protein 23, isoform c protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 421 YKCLFKVEKCSKFKLQCIQSENRLKQITKQYNEIDET 531
           + C+FK+E+C + +++ I   +RL + TK    + ET
Sbjct: 326 HNCMFKLEECDREEIEAI--TDRLTKRTKTVQVVVET 360


>AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated
           protein 23, isoform a protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 421 YKCLFKVEKCSKFKLQCIQSENRLKQITKQYNEIDET 531
           + C+FK+E+C + +++ I   +RL + TK    + ET
Sbjct: 327 HNCMFKLEECDREEIEAI--TDRLTKRTKTVQVVVET 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,274
Number of Sequences: 27780
Number of extensions: 262874
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)