Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_E02
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 45 2e-05
11_04_0234 + 15187065-15188241,15188316-15188494 39 0.002
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 1.6
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 2.2
12_02_0292 + 16979550-16980662,16983249-16983731 27 5.0
05_03_0191 - 9521496-9521921 27 5.0
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 27 6.6
07_03_1383 + 26172329-26172448,26172770-26172961 27 6.6
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 27 6.6
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436 27 6.6
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 27 8.7
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 27 8.7
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 45.2 bits (102), Expect = 2e-05
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +3
Query: 3 DIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGI 179
D VN+ AF P N + AP+Y +R +A + W+ G P K+V+GI
Sbjct: 226 DWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMGI 282
Query: 180 STTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEI 311
GR+W L + + P+ A + G + G +SY E+
Sbjct: 283 PLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 39.1 bits (87), Expect = 0.002
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +3
Query: 3 DIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGIS 182
D VNI F + N AD AP+Y ++D +A + W+ G P KLV+GI
Sbjct: 229 DWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIP 282
Query: 183 TTGRTWKL-DSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEI 311
GR+W L + D G P A G + ++ G+++Y EI
Sbjct: 283 LFGRSWFLRNKDKNGLGAPT--AAAGTKQRKSNQI-GVIAYAEI 323
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 165 LVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEICAK 320
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 100 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 210
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 158 PQTCPWYQHHWTYVEARFR 214
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 146 WCAYPQTCPWYQHHWTYVEARFR 214
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/93 (23%), Positives = 36/93 (38%)
Frame = +3
Query: 111 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQG 290
N + +IN+W+ T G + + S + G A G GP ++
Sbjct: 508 NGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCD 567
Query: 291 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRF 389
+ SY + LI +G+RP L+ P F
Sbjct: 568 IYSYGVLLLVLI----SGRRP-LQVTASPMSEF 595
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 50 PQRGGLHCTDLRTAEPRSSTKRRR 121
P RGG R A P SS +RRR
Sbjct: 10 PARGGTAAASARAAPPSSSRRRRR 33
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 51 PKEADYTAPIYAPQNRDPLQNADAAI-NYWIQNGAP 155
P+ D + PIY P PL+N A+ N Q AP
Sbjct: 167 PQRPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAP 202
>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
Length = 86
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 318 KLINPNQNGKRPHLRK 365
K I PN++GK PH+RK
Sbjct: 15 KTIPPNRHGKAPHVRK 30
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 100 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 210
++Y +PT++ + GF +L LSL+ A ++ G+ +
Sbjct: 281 VMYYSPTIVQMAGFTSNKLALLLSLIVAGMNAAGTIV 317
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 273 KDQLHHPXRRVSVELRKFHCLNRA 202
K+ L ++V +++RK +C+NRA
Sbjct: 168 KEPLKATTQQVEIQVRKIYCINRA 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,809
Number of Sequences: 37544
Number of extensions: 276084
Number of successful extensions: 732
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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