Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E01
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    29   0.28 
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    28   0.49 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   6.1  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 6   VLRAPNKRVVRA-TRKLNPLTNTKAMLKLNPYAAVLRRKAVL 128
           V  A   RV RA  +K NPL N   + +LNPYA   +    L
Sbjct: 302 VKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKL 343


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 6   VLRAPNKRVVRA-TRKLNPLTNTKAMLKLNPYA 101
           V  A   RV RA  +K NPL N   + +LNPYA
Sbjct: 302 VKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYA 334


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 299 PPSAPQEEDAQGSQT*GESGQT 364
           P S P+E+D++G  +  E+G T
Sbjct: 608 PKSEPKEQDSEGYSSGSETGST 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,485
Number of Sequences: 5004
Number of extensions: 14035
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)