Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_E01
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 46 1e-05
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 42 1e-04
08_01_0992 + 10045182-10045917,10046225-10046685 31 0.36
12_02_0885 + 23994354-23994584,23994987-23995342,23995549-239956... 29 1.1
07_01_0072 - 525351-525494,526029-526256,526345-526458,527616-52... 29 1.4
03_03_0138 + 14766592-14766754,14768052-14768476 29 1.4
03_02_0760 + 10960381-10960461,10960740-10961003,10961334-109616... 28 2.5
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 27 4.4
08_02_1572 - 27952418-27952727,27952872-27953133,27954018-279541... 27 4.4
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 27 4.4
12_02_1164 + 26620779-26621087 27 5.8
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 27 5.8
03_02_0911 - 12329146-12329610 27 5.8
02_02_0244 - 8232627-8233174,8233291-8233318,8233599-8233648,823... 27 5.8
11_01_0184 - 1444246-1444434,1446291-1446719 27 7.7
07_03_1228 - 25009736-25010965 27 7.7
06_03_0851 - 25363870-25364006,25364586-25364889,25365232-25365975 27 7.7
01_01_0315 + 2560337-2560675,2560737-2560781,2561630-2561749,256... 27 7.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 46.0 bits (104), Expect = 1e-05
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = +3
Query: 6 VLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGI 185
V++ NK V R ++ NPL N A+LKLNPY R+ A L + R R + KR
Sbjct: 306 VVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTK 365
Query: 186 KLPE 197
PE
Sbjct: 366 LSPE 369
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +3
Query: 6 VLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGI 185
V++ NK V + NPL N A+LKLNPY R+ A L + R R + KR
Sbjct: 305 VVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTK 364
Query: 186 KLPE 197
PE
Sbjct: 365 LSPE 368
>08_01_0992 + 10045182-10045917,10046225-10046685
Length = 398
Score = 31.1 bits (67), Expect = 0.36
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 77 DVEAEPVRRGAETEGGSRTGQEEQPEGARRRR 172
D EA P +GG R E+P GARRRR
Sbjct: 251 DPEAVPAGAYGAEDGGRRRRDAERPRGARRRR 282
>12_02_0885 +
23994354-23994584,23994987-23995342,23995549-23995663,
23995918-23995962,23996151-23996333,23996802-23996978,
23997345-23997476,23997587-23997766,23999116-23999247,
24000212-24000280,24000377-24000490,24000579-24000806,
24001343-24001486
Length = 701
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 41 DTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
+ E++ D+YE DVE E E E R + ++RR+E
Sbjct: 629 EDELDEEDEYEEDVEEEAAMSDEEIEEPKRRRESGGASASQRRKE 673
>07_01_0072 -
525351-525494,526029-526256,526345-526458,527616-527747,
529086-529265,529376-529507,529879-530055,530536-530718,
530894-530938,531192-531306,531770-532128,532700-532939
Length = 682
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 41 DTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
+ E++ D+YE DVE E E E R + ++RR+E
Sbjct: 610 EDELDEEDEYEEDVEEEAAMSDEEIEEPKRRRESGGGSASQRRKE 654
>03_03_0138 + 14766592-14766754,14768052-14768476
Length = 195
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 74 GDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRETW 181
G V+AE R EGG G+ RRRR TW
Sbjct: 141 GWVQAECGYRSRSREGGGTEGRRVIDREVRRRRSTW 176
>03_02_0760 +
10960381-10960461,10960740-10961003,10961334-10961619,
10961637-10962394
Length = 462
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 8 PARAQQACC*SDTEIEPADQYEGDV-EAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
PAR Q A + A+Q +V E RR E + R G+EE+ G ++RRE
Sbjct: 17 PAR-QHAASPGQVPLCSAEQSRAEVAERNKRRRLLEVKAELRRGREEERRGEKQRRE 72
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 53 EPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRR 172
E A + E VE E E +GG + +E + E RRRR
Sbjct: 9 EAAKEEEEVVEEEDDEEEGEEDGGEQPRRERERERRRRRR 48
>08_02_1572 -
27952418-27952727,27952872-27953133,27954018-27954107,
27955653-27955695
Length = 234
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 2 QGPARAQQACC*S--DTEIEPADQYEGDV-EAEPVRRGAETEGGSRTGQEEQPEGARRRR 172
+GP R +++ + E+ PA+Q + E +P R ++ + S+ G+EE+ R+R
Sbjct: 132 KGPRREEESSSFNLDPPEMVPAEQADNPPPETKPEREDSDDDRRSKRGREERGGEKERKR 191
Query: 173 E 175
E
Sbjct: 192 E 192
>04_04_1193 +
31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 47 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQ--EEQPEGARRRRETW 181
+++ D + GD + GAE G R G+ E G +RR W
Sbjct: 98 QVQRGDAWHGDPDESADGHGAEQTGRPRRGKVGEASGSGGKRRSGIW 144
>12_02_1164 + 26620779-26621087
Length = 102
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 104 GAETEGGSRTG--QEEQPEGARRRRETWH 184
G E +GG G +EEQ G RRRE H
Sbjct: 50 GEEEQGGDAAGHGEEEQGGGVARRREEVH 78
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 74 GDVEAEPVRRGAETEGGSRTGQE-EQPEGARRRR 172
GD AEP G G R G+E E+ E A RR
Sbjct: 23 GDAAAEPAMAGTPNRGQERGGEEGEEEEKAVLRR 56
>03_02_0911 - 12329146-12329610
Length = 154
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 89 EPVRRGAETEGGSRTGQEEQPEGA 160
EPV E EGG G+EE+ E A
Sbjct: 60 EPVEARKEREGGPGKGEEEEEEAA 83
>02_02_0244 -
8232627-8233174,8233291-8233318,8233599-8233648,
8234478-8234583
Length = 243
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 98 RRGAETEGGSRTGQEEQPEGARRRR 172
+R AET GG T E+ GA RRR
Sbjct: 121 QRSAETGGGGGTETVEERSGATRRR 145
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 71 EGDVEAEPVRRGAE-TEGGSRTGQEEQPEGARRRR 172
EG VEA V G E GG EE ARRRR
Sbjct: 85 EGGVEAAAVEGGEEGARGGDGGRAEEGVTAARRRR 119
>07_03_1228 - 25009736-25010965
Length = 409
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 41 DTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
+ E E + G+ E EP G E E +EE+PE E
Sbjct: 312 EEEEEEEPEEGGEEEEEPEEGGEEEEEEEEEEEEEEPEEGAEEEE 356
>06_03_0851 - 25363870-25364006,25364586-25364889,25365232-25365975
Length = 394
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Frame = +2
Query: 5 GPARAQQACC*----SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGAR 163
G ACC D E EP + +E EPV ++ E TG E+ E +
Sbjct: 277 GQTTKWHACCTIEPVPDEEAEPGSNHSSMLEVEPV-SDSDGESSEETGDEDLLENTK 332
>01_01_0315 +
2560337-2560675,2560737-2560781,2561630-2561749,
2562224-2562444,2562799-2562901,2562997-2563074,
2563176-2563267,2563377-2563439,2563527-2563749,
2563788-2563886
Length = 460
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 41 DTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQP-EGARRRRE 175
DT ++PAD+Y D + R + E G + E+ +G +++++
Sbjct: 145 DTGVDPADRYGSDNDGHSPRHYPQAEEGEEDDEIERLFKGGKKKKK 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,379,657
Number of Sequences: 37544
Number of extensions: 113778
Number of successful extensions: 553
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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