Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_E01
(412 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4 prot... 59 6e-09
D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein. 59 6e-09
BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4 va... 59 6e-09
AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4 pr... 59 6e-09
AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4 va... 57 2e-08
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel... 31 1.5
U18945-1|AAA91633.1| 299|Homo sapiens cyclic nucleotide gated c... 31 1.5
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c... 31 1.5
U50822-1|AAA93480.1| 356|Homo sapiens NEUROD protein. 29 4.5
D82347-1|BAA11558.1| 356|Homo sapiens NeuroD protein. 29 4.5
BC009046-1|AAH09046.1| 356|Homo sapiens neurogenic differentiat... 29 4.5
AF286472-1|AAG00551.1| 567|Homo sapiens retinitis pigmentosa GT... 29 4.5
AF045152-1|AAC83145.1| 356|Homo sapiens neurogenic differentiat... 29 4.5
AB018693-1|BAA76603.1| 356|Homo sapiens NeuroD protein. 29 4.5
AB016079-1|BAA36519.1| 356|Homo sapiens BETA2 protein. 29 4.5
AB009997-1|BAA87605.1| 356|Homo sapiens NeuroD protein. 29 4.5
BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein. 29 6.0
AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein pr... 29 6.0
AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein. 29 6.0
>L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4
protein.
Length = 426
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 299 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 349
>D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4
variant protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4
variant protein.
Length = 441
Score = 57.2 bits (132), Expect = 2e-08
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 155
+ LRAP K++ R K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 314 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILCQARNHKLR 364
>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel
beta subunit protein.
Length = 1251
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 154
Q P ++ + E+EP + E +VE EP AETE S +E E
Sbjct: 11 QPPGTPRKTKMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKE 61
>U18945-1|AAA91633.1| 299|Homo sapiens cyclic nucleotide gated
channel gamma subunit protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 154
Q P ++ + E+EP + E +VE EP AETE S +E E
Sbjct: 11 QPPGTPRKTKMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKE 61
>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
CNG-channel beta subunit protein.
Length = 1245
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 154
Q P ++ + E+EP + E +VE EP AETE S +E E
Sbjct: 11 QPPGTPRKTKMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKE 61
>U50822-1|AAA93480.1| 356|Homo sapiens NEUROD protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
QGP C S E AD+ E D+EA + GG ++E E E
Sbjct: 17 QGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEE 74
>D82347-1|BAA11558.1| 356|Homo sapiens NeuroD protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
QGP C S E AD+ E D+EA + GG ++E E E
Sbjct: 17 QGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEE 74
>BC009046-1|AAH09046.1| 356|Homo sapiens neurogenic differentiation
1 protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
QGP C S E AD+ E D+EA + GG ++E E E
Sbjct: 17 QGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEE 74
>AF286472-1|AAG00551.1| 567|Homo sapiens retinitis pigmentosa
GTPase regulator protein.
Length = 567
Score = 29.5 bits (63), Expect = 4.5
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 47 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGA----RRRRE 175
E E + EG+VE E E E G G+E + EG RR RE
Sbjct: 429 EEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNRE 475
>AF045152-1|AAC83145.1| 356|Homo sapiens neurogenic differentiation
factor 1 protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
QGP C S E AD+ E D+EA + GG ++E E E
Sbjct: 17 QGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEE 74
>AB018693-1|BAA76603.1| 356|Homo sapiens NeuroD protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
QGP C S E AD+ E D+EA + GG ++E E E
Sbjct: 17 QGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEE 74
>AB016079-1|BAA36519.1| 356|Homo sapiens BETA2 protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
QGP C S E AD+ E D+EA + GG ++E E E
Sbjct: 17 QGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEE 74
>AB009997-1|BAA87605.1| 356|Homo sapiens NeuroD protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 2 QGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 175
QGP C S E AD+ E D+EA + GG ++E E E
Sbjct: 17 QGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEE 74
>BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein.
Length = 954
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 149 VVPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 51
++ P L R P H VR+ L RLRIG+R Q
Sbjct: 115 LIYPQLHLVRTPEGHGEVRLHLGFRLRIGKRSQ 147
>AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 149 VVPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 51
++ P L R P H VR+ L RLRIG+R Q
Sbjct: 6 LIYPQLHLVRTPEGHGEVRLHLGFRLRIGKRSQ 38
>AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein.
Length = 939
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 149 VVPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 51
++ P L R P H VR+ L RLRIG+R Q
Sbjct: 100 LIYPQLHLVRTPEGHGEVRLHLGFRLRIGKRSQ 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,492,259
Number of Sequences: 237096
Number of extensions: 587883
Number of successful extensions: 3150
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3142
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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