Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E01
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    37   0.005
Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 3   KVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRR 116
           K +RAP K  V      NPL     + KLNPYA++LR+
Sbjct: 300 KAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRK 337


>Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical
           protein T05H10.6b protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 33  VRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIKLPE 197
           VR TR  +P+T  K  +  +  A     KA+ ++VR+    AL +A   G+  PE
Sbjct: 321 VRKTR--DPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPE 373


>Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical
           protein T05H10.6a protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 33  VRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIKLPE 197
           VR TR  +P+T  K  +  +  A     KA+ ++VR+    AL +A   G+  PE
Sbjct: 304 VRKTR--DPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPE 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,862,091
Number of Sequences: 27780
Number of extensions: 83298
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)