Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D24
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 1.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 1.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 2.4
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 4.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 4.1
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 4.1
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 25 5.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 7.2
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 24 7.2
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 24 7.2
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 24 9.6
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 24 9.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 9.6
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 24 9.6
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 1.0
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +3
Query: 18 SRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD-- 191
S + +++G + + +GT G + G K S +++ + + + AA + +
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286
Query: 192 -NVNGHGATLTKTHIPGFGDKMTAAGKV 272
+ HG T+ HI GD MT G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 347 LRNIWHVFSGECFGT--EIVVVVMEEIYFTGSRHFV 246
+ IW V SG+C T E + V + + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 120 SALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNN 293
+A SV++ N ++ +A++G +NG GA T F + NL HNNN
Sbjct: 1036 TAGASVEIQNNIE--SASSGGDKTQLNGPGADQPVTATITFDKTSPWRNRENLSHNNN 1091
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 189 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 278
+N AT T T GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.0 bits (52), Expect = 4.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 60 DGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPG 239
D +SGA++ V T + GS+ T+ + T+G + V T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 4.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 356 VRNLRNIWHVFSGEC 312
+ N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 163 PNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSE 56
PNF +L EP A+ L F G+ + +PS+
Sbjct: 106 PNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSK 141
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 15 NSRVRRQAGALTINSDGTSGAMVKVPITGNENH-KLSALGSVDLT 146
NS V + G+ + +S T +PI ENH L++ GS ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 335 WHVFSGECFGTEIVVV 288
W VFSG +GT I+ +
Sbjct: 87 WAVFSGNMYGTSIMAI 102
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
2|||Manual
Length = 967
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 141 LTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKM 254
+T+ + A LA N+ G + + TH+PG G +
Sbjct: 922 ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 174 AGLAYDNVNGHGATLTKTHIPG 239
A A DN+ GA+L H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 181 WLMTT*TDTERPSQKLISLGSVTK 252
WL+ ++TE P+Q+L +L S++K
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSK 215
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 128 WFSRSH*PNEVGSCYSWIGL*QRERTR 208
W SR N G +SWIG + RTR
Sbjct: 1479 WLSRG---NTKGHAHSWIGFCRLARTR 1502
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 166 LLQLDWLMTT*TDTERPSQKLISLGSVT 249
L + D L T+ DTERP+ K L S +
Sbjct: 4 LFRFDVLETSTKDTERPNSKSSRLSSTS 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,085
Number of Sequences: 5004
Number of extensions: 32286
Number of successful extensions: 70
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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