Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D24
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    27   3.9  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   3.9  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    27   5.2  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    27   6.9  
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758...    27   6.9  
06_01_0825 + 6233525-6233740,6234274-6234461,6234544-6234668,623...    26   9.1  
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143...    26   9.1  
02_05_0792 - 31777775-31778220,31778506-31778630,31778724-317789...    26   9.1  

>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 386 VVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 279
           + HSG  + +V  L N W+++    F  + VV+V E
Sbjct: 420 LAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 36  AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 209
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 175 AVAAPNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSEL 53
           AV AP  +W  R   PR L+L   L +MG   + P +   L
Sbjct: 53  AVMAPFALWFERRVRPR-LTLIIFLKIMGLAILEPVLDQNL 92


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 39  GALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 209
           G     SD  + A V  P    E+ ++   G+V++    +L AAT     D + G G
Sbjct: 23  GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79


>02_02_0184 -
           7581345-7581769,7581880-7582296,7582891-7583661,
           7583894-7584437,7584794-7584961,7585019-7585101,
           7585190-7585631
          Length = 949

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 317 ECFGTEIVVVVMEEIYFTGSRHFVTEPRDMSFCE 216
           ECF  EI+  +MEE+        V E RD+S+ E
Sbjct: 316 ECFAKEILHSIMEELGHDVFCLLVDESRDVSYKE 349


>06_01_0825 +
           6233525-6233740,6234274-6234461,6234544-6234668,
           6234858-6234917,6235043-6235074
          Length = 206

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 243 GDKMTAAGKVNLFHNNNHDFSAKAF 317
           GD    A  VNL H N  DF+A  F
Sbjct: 73  GDDAILARAVNLLHANKEDFAAVLF 97


>03_01_0178 +
           1437263-1438017,1438754-1438858,1438950-1439072,
           1439908-1440078,1440163-1440292,1440372-1440581,
           1440675-1440773
          Length = 530

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 42  ALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 209
           A T       GA  +   +G+   ++S LG        +L  AT GLA +NV G G
Sbjct: 172 ATTSGGSERDGATPRSTASGSAGPEVSHLGWGHWFTLRELEEATDGLAEENVIGEG 227


>02_05_0792 -
           31777775-31778220,31778506-31778630,31778724-31778911,
           31779716-31779892
          Length = 311

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 243 GDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQV-PNFNTVGA 374
           GD++T A  + L H N  D+ A  F     P   +  PNF  + +
Sbjct: 60  GDEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNFEILAS 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,539,314
Number of Sequences: 37544
Number of extensions: 231215
Number of successful extensions: 492
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)