Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D24
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical p...    27   4.6  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   6.1  

>U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical
           protein F16H11.3 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 133 EPRALSLWFSLPVMGTLTIAPEVPSELI 50
           +P  +  W+S   MG+LTIA ++P+  I
Sbjct: 57  KPDGVETWYSKEFMGSLTIASQLPNASI 84


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 225 THIP----GFGDKMTAAGKVNLFHNNN 293
           +H+P    GFGDK T +  +  F+NNN
Sbjct: 237 SHLPDPRLGFGDKTTGSDSLQKFYNNN 263


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 141 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 242
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical
           protein E02C12.10 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 237 GFG-DKMTAAGKVNL-FHNNNHDFSAKAFATKNMPNIP 344
           GFG DK+   GK    FHN   D S K     N PNIP
Sbjct: 514 GFGEDKLKRLGKTTREFHNREVD-SYKLLMRYNHPNIP 550


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
           protein B0416.1 protein.
          Length = 1203

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 119 ELVVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVS 12
           + V  + S   +DHSTG     DSEST     P++S
Sbjct: 876 QFVPSLGSVSEVDHSTGEEQSSDSESTTSSLPPKLS 911


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 154 IWLVRSTEPRALSLWFSLPVMGTLTIA 74
           +W+VRS E R L+++F + V+  +++A
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMA 195


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 371 TDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFTGSRHFVTEPRDMS 225
           T+   VRNL+ ++HVF      ++IV   +  + F      +   + MS
Sbjct: 753 TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 801


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 371 TDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFTGSRHFVTEPRDMS 225
           T+   VRNL+ ++HVF      ++IV   +  + F      +   + MS
Sbjct: 753 TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 801


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 371 TDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFTGSRHFVTEPRDMS 225
           T+   VRNL+ ++HVF      ++IV   +  + F      +   + MS
Sbjct: 706 TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 754


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,217
Number of Sequences: 27780
Number of extensions: 187371
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)