Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D23
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   3.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.2  
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    25   6.8  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   6.8  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   9.0  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   9.0  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   9.0  

>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 494 GAGVDYMFKDKIGASATAAHTDVFDRNDYSLGG 592
           G+G   +F DK G    A     FD+ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 12  TQRCSPSYSSCQFFWSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGKRVLSLSTLTA 191
           TQR  PSY   +     +T GT S+    N+S+N     + G  P +   ++ S  T   
Sbjct: 26  TQRVRPSYELIEAPTRQATNGTGSVSGSPNSSSN-STPANQGSLPSHTNPQLYSSITRKE 84

Query: 192 PQVLWSRY 215
              L+  Y
Sbjct: 85  RPELFRSY 92


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +2

Query: 143  SRVRRQAGALTINSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD-- 316
            S + +++G + +  +GT G    +   G    + S    +++ + + + AA   +  +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 317  -NVNGHGATLTKTHIPGFGDKMTAAGKV 397
              +  HG T+   HI   GD MT  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 368 GDKMTAAGKVNLFHNDNHDFSAKAFATKNMPNIPQVPNFNTVGAG 502
           G  +    KVN+F  D  DF+A     K M   P +P   TV AG
Sbjct: 64  GSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDP-MPARTTVAAG 107


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 190 HLRCYGQGTYNWKRKSQAQCSWLR 261
           HL  YG+ TYN    +  Q SW +
Sbjct: 176 HLEVYGRTTYNIVLHNSWQASWFK 199


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 314 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 403
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 306 WLMTT*TDTERPSQKLISLGSVTK*RLPAKXXXXXXXXXXXVPKHSPLKTCQIFLKFRTS 485
           WL+   ++TE P+Q+L +L S++K  +                +   + T  +  KF T+
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTN 251

Query: 486 TLS-VPEWTTCS 518
           T     E  +CS
Sbjct: 252 TAKYANELVSCS 263


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 481 VRNLRNIWHVFSGEC 437
           + N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,295
Number of Sequences: 5004
Number of extensions: 55135
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)