Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D22
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    24   3.4  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    24   4.4  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    23   5.9  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    23   7.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   7.8  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    23   7.8  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 218 DQYLK*NESASNKFNLNIATVPHTYSSRK 132
           DQYL   E+  +   + I T+ H Y SR+
Sbjct: 383 DQYLTNLEAFPSSLFMKILTLDHVYGSRE 411


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 182 KFNLNIATVPHTYSSRKFPINSGHVYILINYFALSPGDRYFRN 54
           KF  N     +T+   K    S  VYIL  YFA     +  RN
Sbjct: 84  KFKSNYLLKSYTHQLVKEADGSEFVYILFPYFAKGSVAQVIRN 126


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 4/16 (25%), Positives = 12/16 (75%)
 Frame = +3

Query: 213 LVVEWGEVQNLWSYLF 260
           ++  W +++ +WSY++
Sbjct: 79  IIQNWSDMEEIWSYIY 94


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  TLVA*KSLEKLYKYFENIDHLVIRQNS*SEY 106
           +LV  K++       +N+D  +IR+N+  EY
Sbjct: 114 SLVLIKNIPGFKTRHDNVDFAIIRENTEGEY 144


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 255  NNSINFGPHPILRPIL 208
            +NS+ F P P+ +PIL
Sbjct: 2408 DNSLRFAPVPMTKPIL 2423


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -3

Query: 242 ILDLTPFYDQYLK*NESASNKFNLNIATVPHTYSSRKFPINSGHVYILINYFALSPGDRY 63
           I  L   YD  +  +E+  N  N+ +  +     S    I SG   ++     L+P  RY
Sbjct: 389 IRKLADSYDFAVVVDETIGNFVNVEVLPLADVVVSSLTKIFSGDSNVMGGSMVLNPSSRY 448

Query: 62  F 60
           +
Sbjct: 449 Y 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,978
Number of Sequences: 5004
Number of extensions: 21642
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)