Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D22
         (274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91...    26   3.6  
11_02_0127 + 8595878-8595952,8596265-8596687,8596980-8597384           25   6.3  
11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364           25   6.3  
08_02_1036 - 23846281-23846624,23846769-23846943                       25   8.3  

>12_01_0120 +
           912312-912615,913145-913371,913507-913754,914293-914656,
           914758-915154,915671-915693,916645-916987,917513-917532,
           918418-918527,919484-920255
          Length = 935

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 154 GTVAMFKLNLFDALSFHFKYWS*NGVRSKIYGVIYLY*T 270
           G+  MF  N    L  +F +WS      ++YG IYLY T
Sbjct: 77  GSTDMFSSNYVATLFPYFLHWS------RVYGSIYLYST 109


>11_02_0127 + 8595878-8595952,8596265-8596687,8596980-8597384
          Length = 300

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 167 IATVPHTYSSRKFPINSGHVY 105
           +A VP ++ +R FP NS H++
Sbjct: 135 VAGVPGSFYTRLFPCNSVHIF 155


>11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364
          Length = 349

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 167 IATVPHTYSSRKFPINSGHVY 105
           +A VP ++ +R FP NS H++
Sbjct: 96  VAGVPGSFYTRLFPCNSVHIF 116


>08_02_1036 - 23846281-23846624,23846769-23846943
          Length = 172

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 128 PINSGHVYILINYFALSPGDRYF 60
           PI+      L+ + ALSPG+ YF
Sbjct: 86  PISDFEGGALVTFIALSPGEHYF 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,239,367
Number of Sequences: 37544
Number of extensions: 103745
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)