Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D21
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    29   2.1  
05_04_0399 - 20955319-20955838,20955939-20956201                       29   2.1  
07_01_0078 + 582592-582747,585226-585305,585384-585543                 29   2.8  
10_08_0168 - 15379897-15380819,15381306-15381894                       28   6.5  
06_02_0265 - 13586552-13587985                                         27   8.6  
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    27   8.6  
01_06_1495 + 37769982-37771496                                         27   8.6  

>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
            24384543-24384597,24384914-24384916,24385192-24385231,
            24385576-24385632,24388124-24388412,24389764-24389771,
            24390633-24390688,24391207-24391488,24391651-24391811,
            24391887-24392121,24392860-24392943,24393022-24393117,
            24393333-24394055,24396523-24396987
          Length = 1642

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 447  IFTILLVVGVHKNK--HGYVKAYVIYASILFGMSVLATITNLIRIQYLS 587
            +F ILLV G H     +GY +A VI   +LF  +V+    +L+R  + S
Sbjct: 1161 LFNILLVWGNHHQHKLNGYSRADVIVTYVLFVGAVILETMSLLRAMFSS 1209


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 117 IHNGEGTATENRRAPPPPY-VSVEAQ 191
           +  G+G A  N+ APPPP+ +SV A+
Sbjct: 130 LSGGDGIAASNKAAPPPPHPISVPAK 155


>07_01_0078 + 582592-582747,585226-585305,585384-585543
          Length = 131

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 444 LIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLATIT 560
           LI   +  +G H  KH ++ A V  +  LFG + +A +T
Sbjct: 80  LILERMKKIGTHNTKHAWMVAGVTISGYLFGAAFVALLT 118


>10_08_0168 - 15379897-15380819,15381306-15381894
          Length = 503

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -2

Query: 135 FLLHCVYGRSLNSIYVSLPS*CTPLNNHYYTKN---VGEYLCGVII 7
           FL HC +   L S +  +P  C PL    +T     V E+  GV +
Sbjct: 388 FLTHCGWNSILESAWAGVPMLCFPLLTDQFTNRRLVVREWRAGVAV 433


>06_02_0265 - 13586552-13587985
          Length = 477

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 168 AVAVHAYSRWRFLLHCVYGRSLNSIYVSLPS*CTPLNNHYYTKNV 34
           AV  HA S   F+ HC +  +L ++   +P  C PL+   +   V
Sbjct: 345 AVLQHA-STGAFVTHCGWNSTLEAVAAGVPMVCWPLDAEQWMNKV 388


>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
 Frame = +3

Query: 69  YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVVTSSKYY---DSYTC 239
           Y++ME + K +S    I        +    PP P  +  +          YY   DS TC
Sbjct: 332 YVRMERNIKASSGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTC 391

Query: 240 CGIFPLKTGCLIIGYYNLVSAVC 308
           C I+     C   G   L  A C
Sbjct: 392 CCIYEYGKYCYAWGCCPLEGATC 414


>01_06_1495 + 37769982-37771496
          Length = 504

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 589 SDRYCILIKLVIVANTLMPKSIEAYIT--*ALTYPCLFLCTPTTSNIVNIKCNARNIINI 416
           +D  CI+I+L+  A +L+P S++  I+   AL +    LC P    I+   CN R   N 
Sbjct: 124 ADLTCIIIQLISTAGSLLP-SMKNPISSNPALRHLSNTLCAPM---ILGTNCNLRPSAND 179

Query: 415 EQNITKV 395
           E  I  +
Sbjct: 180 EATIPDI 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,719
Number of Sequences: 37544
Number of extensions: 324115
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)