Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D21
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC125070-1|AAI25071.1| 587|Homo sapiens chromosome 14 open read... 30 5.4
AK098187-1|BAC05253.1| 587|Homo sapiens protein ( Homo sapiens ... 30 5.4
AF076284-1|AAD42927.1| 93|Homo sapiens MHC class II antigen pr... 30 7.2
AF013767-1|AAC64233.1| 108|Homo sapiens MHC class II antigen pr... 30 7.2
D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein. 29 9.5
CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein. 29 9.5
BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated pr... 29 9.5
BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated pr... 29 9.5
AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein. 29 9.5
>BC125070-1|AAI25071.1| 587|Homo sapiens chromosome 14 open reading
frame 39 protein.
Length = 587
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 475 TPTTSNIVNIKCNARNIINIEQNITKVKPKLRFSV 371
T T NIVN++C ++I+ N+TK +L+ V
Sbjct: 179 TKWTLNIVNLRCETQDILKHASNLTKSSSELKKEV 213
>AK098187-1|BAC05253.1| 587|Homo sapiens protein ( Homo sapiens
cDNA FLJ40868 fis, clone TSTOM1000186. ).
Length = 587
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 475 TPTTSNIVNIKCNARNIINIEQNITKVKPKLRFSV 371
T T NIVN++C ++I+ N+TK +L+ V
Sbjct: 179 TKWTLNIVNLRCETQDILKHASNLTKSSSELKKEV 213
>AF076284-1|AAD42927.1| 93|Homo sapiens MHC class II antigen
protein.
Length = 93
Score = 29.9 bits (64), Expect = 7.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 547 NTLMPKSIEAYIT*ALTYPCLFLCTPT 467
NTL+ +S T Y CLFLC+PT
Sbjct: 67 NTLIQRSNHTQATNGTPYLCLFLCSPT 93
>AF013767-1|AAC64233.1| 108|Homo sapiens MHC class II antigen
protein.
Length = 108
Score = 29.9 bits (64), Expect = 7.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 547 NTLMPKSIEAYIT*ALTYPCLFLCTPT 467
NTL+ +S T Y CLFLC+PT
Sbjct: 81 NTLIQRSNHTQATNGTPYLCLFLCSPT 107
>D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein.
Length = 254
Score = 29.5 bits (63), Expect = 9.5
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 210 SSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVCXXXXXXXXXXXXNNYMDPNNNTEKRNL 389
S ++Y S CCG ++TG +I+G + +V + N+ P N + +
Sbjct: 32 SDRFY-STRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSM--PAVNIQYEVI 88
Query: 390 G-----LTLVIFCSILMIFLALHLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLAT 554
G + +L L I + +LV G + G++ + Y F +S L
Sbjct: 89 GNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVA 148
Query: 555 ITNL 566
I++L
Sbjct: 149 ISSL 152
>CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein.
Length = 233
Score = 29.5 bits (63), Expect = 9.5
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 210 SSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVCXXXXXXXXXXXXNNYMDPNNNTEKRNL 389
S ++Y S CCG ++TG +I+G + +V + N+ P N + +
Sbjct: 11 SDRFY-STRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSM--PAVNIQYEVI 67
Query: 390 G-----LTLVIFCSILMIFLALHLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLAT 554
G + +L L I + +LV G + G++ + Y F +S L
Sbjct: 68 GNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVA 127
Query: 555 ITNL 566
I++L
Sbjct: 128 ISSL 131
>BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 29.5 bits (63), Expect = 9.5
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 210 SSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVCXXXXXXXXXXXXNNYMDPNNNTEKRNL 389
S ++Y S CCG ++TG +I+G + +V + N+ P N + +
Sbjct: 11 SDRFY-STRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSM--PAVNIQYEVI 67
Query: 390 G-----LTLVIFCSILMIFLALHLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLAT 554
G + +L L I + +LV G + G++ + Y F +S L
Sbjct: 68 GNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVA 127
Query: 555 ITNL 566
I++L
Sbjct: 128 ISSL 131
>BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 29.5 bits (63), Expect = 9.5
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 210 SSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVCXXXXXXXXXXXXNNYMDPNNNTEKRNL 389
S ++Y S CCG ++TG +I+G + +V + N+ P N + +
Sbjct: 11 SDRFY-STRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSM--PAVNIQYEVI 67
Query: 390 G-----LTLVIFCSILMIFLALHLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLAT 554
G + +L L I + +LV G + G++ + Y F +S L
Sbjct: 68 GNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVA 127
Query: 555 ITNL 566
I++L
Sbjct: 128 ISSL 131
>AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein.
Length = 215
Score = 29.5 bits (63), Expect = 9.5
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 210 SSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVCXXXXXXXXXXXXNNYMDPNNNTEKRNL 389
S ++Y S CCG ++TG +I+G + +V + N+ P N + +
Sbjct: 11 SDRFY-STRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSM--PAVNIQYEVI 67
Query: 390 G-----LTLVIFCSILMIFLALHLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLAT 554
G + +L L I + +LV G + G++ + Y F +S L
Sbjct: 68 GNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVA 127
Query: 555 ITNL 566
I++L
Sbjct: 128 ISSL 131
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,847,466
Number of Sequences: 237096
Number of extensions: 1868480
Number of successful extensions: 3712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3712
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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