Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D20
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    29   1.6  
AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical ...    29   2.1  
AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    28   4.8  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical p...    27   8.4  

>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 422 QCQSIRH*KHAKYSSSSELQHCRCRSGLHVQR*NWC 315
           QCQ  +    AKY      Q+C+  +  H Q+  WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical
           protein Y62E10A.6 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 176 LNEWCIELLPTGVEVQRRGGRLEKIQFSAQRVV-VAVKDIGVCGGRRCTNFIFEHV 340
           + +W  +L  + ++ +     L K++   +R+  V VK+IG+  G R  +FIF  +
Sbjct: 235 IKDWDSKLEISEIDAKNLTESLPKLERKKKRLTEVLVKNIGIANGLRQCHFIFHRI 290


>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 354 VPEWTTCSKIKL-VHLRPPHTPMSLT 280
           V E   C K+K+ V+ +PPH P+ +T
Sbjct: 258 VREKKNCDKLKINVYFKPPHPPVEIT 283


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 487 GFGDKMTAAGKVNLFHNNN 431
           GFGDK T +  +  F+NNN
Sbjct: 245 GFGDKTTGSDSLQKFYNNN 263


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 391 PNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTD 290
           P +PQ  ++    +G+   F D  GASA+++ TD
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTD 184


>U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical
           protein E02C12.10 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 487 GFG-DKMTAAGKVNL-FHNNNHDFSAKAFATKNMPNIP 380
           GFG DK+   GK    FHN   D S K     N PNIP
Sbjct: 514 GFGEDKLKRLGKTTREFHNREVD-SYKLLMRYNHPNIP 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,923
Number of Sequences: 27780
Number of extensions: 262302
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)