Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D19
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.84 
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    25   3.4  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   3.4  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   5.9  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    24   7.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   7.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 214 SFDALEETFTLHSMGSVIMGR*IPVRGYLP 303
           S DA+ E F+ H   +++ G  IPVR + P
Sbjct: 662 SLDAMTEQFSYHVEPNILSGSGIPVRVHTP 691


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 65  NVQPIGSNQSHVRSAVTTRTYLAHTIINFVQSQITNHPSTF 187
           +V+ +    SH+  A++  T  A TII   + Q  NH  T+
Sbjct: 63  SVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTY 103


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 386 LWHRHFTEPFVASKSHDSLPDLFYISIIGRYPRTGI 279
           L + + ++P++ +K +  L D F  +II RY   G+
Sbjct: 63  LANANMSDPYMQAKLYKELADNFPEAIISRYETQGV 98


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 37  LIHRHVTADECPTDREQPVPCKKRSYYKDLSCAY 138
           + +RH+T  +C  + E+ V C +  ++   S  Y
Sbjct: 583 IFNRHLTEGDCNRNTEKDVKCVRGGFFSYSSKMY 616


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 404 PIDTLQLWHRHFTEPFVASKSH 339
           P  T+Q   +H   PF+  KSH
Sbjct: 240 PKTTIQTDKKHIIRPFIEDKSH 261


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 22   CLTNILIHRHVTADECPT 75
            C T+I+I  +V  DECP+
Sbjct: 1766 CKTDIMIMENVFYDECPS 1783


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 59  LMNVQPIGSN-QSHVRSAVTTRTYLAHTIINFVQSQI 166
           L+  +  GSN +S++      RT++ H++I+ ++S++
Sbjct: 666 LLVFEDFGSNFESNLELNTVLRTHIEHSVISQIKSEL 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,491
Number of Sequences: 5004
Number of extensions: 32141
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)