Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D19
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680...    28   3.2  
02_02_0424 + 10074206-10074287,10074389-10074485,10074584-100746...    27   7.5  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    26   9.9  
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557...    26   9.9  

>10_08_0663 -
           19666476-19667017,19667664-19667755,19668039-19668095,
           19668304-19668447,19668567-19668613,19668733-19668791,
           19668975-19669045,19669274-19669341,19669431-19669598,
           19669885-19669944,19670075-19670251
          Length = 494

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 404 PIDTLQLWHRHFTEPFVASKSHDSLP 327
           PID  +++ R F EP ++  S+ S+P
Sbjct: 220 PIDVARMFGRRFLEPLLSPNSNSSIP 245


>02_02_0424 +
           10074206-10074287,10074389-10074485,10074584-10074651,
           10074727-10074859,10075102-10075137,10076109-10076208,
           10076312-10076424,10076511-10076604,10077301-10077454,
           10077563-10077706,10077802-10077875,10077949-10078037,
           10078311-10078365,10078563-10078616
          Length = 430

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 41  FIGM*LLMNVQPIGSNQSHVRSAVTTRTYLAHTIINFVQSQITNHPSTFKFASRS 205
           F+GM   M +Q +G+N+ H+ SA     YL  ++   +   I++ P  + F+  S
Sbjct: 362 FLGMAFAMGLQAVGANRHHLGSA---SVYL--SVGGMLLPSISHQPKGYHFSYTS 411


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 233 KPSRCIVWVALSWEDEF 283
           K  +C+VW+   W D F
Sbjct: 718 KDEKCLVWIVEGWNDRF 734


>03_05_0434 +
           24252994-24253449,24254791-24254877,24255450-24255748,
           24256146-24256383,24256907-24257441,24257527-24257729,
           24258311-24258520
          Length = 675

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 162 CDWTKLIIVCAR*VLVVTALLTWDWLLPI 76
           C WT   I+ A    VV ++L+W WLL +
Sbjct: 346 CFWTIGTILEASLAWVVISVLSWRWLLAL 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,609
Number of Sequences: 37544
Number of extensions: 203469
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)