Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D19
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 33 0.059
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 33 0.059
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 33 0.059
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 33 0.059
AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical ... 31 0.31
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 30 0.55
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 30 0.55
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 30 0.73
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 30 0.73
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 30 0.73
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 30 0.73
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 30 0.73
U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine r... 29 0.96
AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine... 29 1.7
Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical p... 28 2.2
Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical p... 28 2.2
AC024785-9|ABQ40025.1| 359|Caenorhabditis elegans C-type lectin... 28 2.9
AC024785-8|ABQ40024.1| 359|Caenorhabditis elegans C-type lectin... 28 2.9
AC024785-7|ABQ40023.1| 359|Caenorhabditis elegans C-type lectin... 28 2.9
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 27 6.8
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 27 6.8
AC006832-3|AAF39997.1| 176|Caenorhabditis elegans Hypothetical ... 27 6.8
Z70210-8|CAA94154.2| 414|Caenorhabditis elegans Hypothetical pr... 26 9.0
U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily ass... 26 9.0
U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily ass... 26 9.0
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 26 9.0
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 26 9.0
AY204169-1|AAO39173.1| 414|Caenorhabditis elegans nuclear recep... 26 9.0
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 26 9.0
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 26 9.0
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 26 9.0
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 33.5 bits (73), Expect = 0.059
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 100 KKRSYYKDLSCAYNN*FRPVTDHKSSVNVQVRFAIKYI 213
++R Y+DL YNN RPV +H V V ++ A++ I
Sbjct: 22 QERRLYEDLMRNYNNLERPVANHSEPVTVHLKVALQQI 59
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 33.5 bits (73), Expect = 0.059
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 100 KKRSYYKDLSCAYNN*FRPVTDHKSSVNVQVRFAIKYI 213
++R Y+DL YNN RPV +H V V ++ A++ I
Sbjct: 22 QERRLYEDLMRNYNNLERPVANHSEPVTVHLKVALQQI 59
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 33.5 bits (73), Expect = 0.059
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 100 KKRSYYKDLSCAYNN*FRPVTDHKSSVNVQVRFAIKYI 213
++R Y+DL YNN RPV +H V V ++ A++ I
Sbjct: 22 QERRLYEDLMRNYNNLERPVANHSEPVTVHLKVALQQI 59
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 33.5 bits (73), Expect = 0.059
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 100 KKRSYYKDLSCAYNN*FRPVTDHKSSVNVQVRFAIKYI 213
++R Y+DL YNN RPV +H V V ++ A++ I
Sbjct: 22 QERRLYEDLMRNYNNLERPVANHSEPVTVHLKVALQQI 59
>AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical
protein Y48B6A.4 protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.31
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 118 KDLSCAYNN*FRPVTDHKSSVNVQVRFAI-KYISFDALEETFTL 246
KDL Y+ RPV DH+ VNV++R + + + D + TL
Sbjct: 30 KDLREGYDPVERPVADHRKPVNVKLRLILQQLVDVDERNQVITL 73
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 254 WVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
W+ L W DE L+ D + R V +H IW P
Sbjct: 81 WLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKP 114
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 254 WVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
W+ L W DE L+ D + R V +H IW P
Sbjct: 81 WLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKP 114
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 29.9 bits (64), Expect = 0.73
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 251 VWVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
VW+ +SW D +L+ D + K ++ + IW P
Sbjct: 75 VWLRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKP 109
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 254 WVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
W+ W+DEFL+ + K V S +IW P
Sbjct: 76 WIEEYWQDEFLTWNPSDFGNIKSLHVPSEMIWKP 109
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 254 WVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
W+ W+DEFL+ + K V S +IW P
Sbjct: 76 WIEEYWQDEFLTWNPSDFGNIKSLHVPSEMIWKP 109
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 29.9 bits (64), Expect = 0.73
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 251 VWVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
VW+ +SW D +L+ D + K ++ + IW P
Sbjct: 75 VWLRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKP 109
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 254 WVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
W+ W+DEFL+ + K V S +IW P
Sbjct: 60 WIEEYWQDEFLTWNPSDFGNIKSLHVPSEMIWKP 93
>U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine
receptor protein 5 protein.
Length = 548
Score = 29.5 bits (63), Expect = 0.96
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 251 VWVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
VW+ W DEFL + R V H IW P
Sbjct: 156 VWMVQHWYDEFLDWNPVDYGMINRTIVPYHQIWIP 190
>AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine
receptor protein 21 protein.
Length = 469
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 115 YKDLSCAYNN*FRPVTDHKSSVNVQVRFAI-KYISFDALEETFTLHS 252
Y+DL YNN RP K +NV F++ + I D + T +S
Sbjct: 4 YRDLLYDYNNEVRPSVHSKEPINVTFVFSLTQIIDVDERNQILTTNS 50
>Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 46 RHVTADECPTDREQPVPCKKRSYYKDLSCAYNN*FRPVTDHKSSVNVQVRFAIKYISF 219
+H+ D+ P + +P P KK + K + + V + S N QV+ Y SF
Sbjct: 139 KHIIHDKQPEEAWRPEPAKKIDFAKKMEQRQKKPVKQVPEMNSKAN-QVQCPTNYASF 195
>Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 46 RHVTADECPTDREQPVPCKKRSYYKDLSCAYNN*FRPVTDHKSSVNVQVRFAIKYISF 219
+H+ D+ P + +P P KK + K + + V + S N QV+ Y SF
Sbjct: 139 KHIIHDKQPEEAWRPEPAKKIDFAKKMEQRQKKPVKQVPEMNSKAN-QVQCPTNYASF 195
>Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 46 RHVTADECPTDREQPVPCKKRSYYKDLSCAYNN*FRPVTDHKSSVNVQVRFAIKYISF 219
+H+ D+ P + +P P KK + K + + V + S N QV+ Y SF
Sbjct: 139 KHIIHDKQPEEAWRPEPAKKIDFAKKMEQRQKKPVKQVPEMNSKAN-QVQCPTNYASF 195
>AC024785-9|ABQ40025.1| 359|Caenorhabditis elegans C-type lectin
protein 75, isoform c protein.
Length = 359
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 117 VVTALLTWDWLLPIGWTFISSHMPMNKY 34
V + +L+WD LP+G+T SH+ N +
Sbjct: 94 VSSGMLSWDNGLPVGYTNFGSHVGENYF 121
>AC024785-8|ABQ40024.1| 359|Caenorhabditis elegans C-type lectin
protein 75, isoform b protein.
Length = 359
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 117 VVTALLTWDWLLPIGWTFISSHMPMNKY 34
V + +L+WD LP+G+T SH+ N +
Sbjct: 94 VSSGMLSWDNGLPVGYTNFGSHVGENYF 121
>AC024785-7|ABQ40023.1| 359|Caenorhabditis elegans C-type lectin
protein 75, isoform a protein.
Length = 359
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 117 VVTALLTWDWLLPIGWTFISSHMPMNKY 34
V + +L+WD LP+G+T SH+ N +
Sbjct: 94 VSSGMLSWDNGLPVGYTNFGSHVGENYF 121
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 26.6 bits (56), Expect = 6.8
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -1
Query: 154 DEINYCMRKISPCSN 110
D++ YC +K++PC N
Sbjct: 984 DKLEYCTKKLNPCEN 998
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 26.6 bits (56), Expect = 6.8
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -1
Query: 154 DEINYCMRKISPCSN 110
D++ YC +K++PC N
Sbjct: 984 DKLEYCTKKLNPCEN 998
>AC006832-3|AAF39997.1| 176|Caenorhabditis elegans Hypothetical
protein ZK355.3 protein.
Length = 176
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 335 SLPDLFYISIIGRYPRTGIHLPMITLPILCNVKVSSKASKLMYLIAK 195
S P FYI ++ P T +I P+L VK++ K YL K
Sbjct: 2 STPLPFYIRLLPPLPGTRPAPKLINFPVLLIVKLNQICQKQKYLRTK 48
>Z70210-8|CAA94154.2| 414|Caenorhabditis elegans Hypothetical
protein K08H2.8 protein.
Length = 414
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 148 FRPVTDHKSSVNVQVRFAIKYISFDALEETFTL 246
FR + DH + FA+KY+ D + T+ L
Sbjct: 224 FRMLCDHNDKTKLLRAFALKYMLLDNVYHTYEL 256
>U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform a protein.
Length = 462
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 374 HFTEPFVASKSHDSLPD 324
H+ EPF A+++ +SLPD
Sbjct: 90 HYLEPFEATENQNSLPD 106
>U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform b protein.
Length = 638
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 374 HFTEPFVASKSHDSLPD 324
H+ EPF A+++ +SLPD
Sbjct: 266 HYLEPFEATENQNSLPD 282
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 242 RCIVWVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
+ ++W SW+D++L+ D + +R + IW P
Sbjct: 83 KILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWIP 120
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 242 RCIVWVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
+ ++W SW+D++L+ D + +R + IW P
Sbjct: 83 KILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWIP 120
>AY204169-1|AAO39173.1| 414|Caenorhabditis elegans nuclear receptor
NHR-32 protein.
Length = 414
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 148 FRPVTDHKSSVNVQVRFAIKYISFDALEETFTL 246
FR + DH + FA+KY+ D + T+ L
Sbjct: 224 FRMLCDHNDKTKLLRAFALKYMLLDNVYHTYEL 256
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 395 TLQLWHRHFTEPFVASKSHDSLPDLFYISIIGRYPRTGIHLPMITLPILCNVKVSSKA 222
TL + + +A+ SLP LFY+ GR +T +++ + + + +KV+ A
Sbjct: 1022 TLNDQQKRAADQILAALDDASLPRLFYLDGPGRSGKTYLYITLYNICVGRGLKVACTA 1079
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 395 TLQLWHRHFTEPFVASKSHDSLPDLFYISIIGRYPRTGIHLPMITLPILCNVKVSSKA 222
TL + + +A+ SLP LFY+ GR +T +++ + + + +KV+ A
Sbjct: 1022 TLNDQQKRAADQILAALDDASLPRLFYLDGPGRSGKTYLYITLYNICVGRGLKVACTA 1079
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 26.2 bits (55), Expect = 9.0
Identities = 8/38 (21%), Positives = 20/38 (52%)
Frame = +2
Query: 242 RCIVWVALSWEDEFLSVDTFQLWRYKRDQVESHVIWTP 355
+ ++W SW+D++L D + ++ + ++W P
Sbjct: 76 KLLIWFPQSWKDDYLVWDPDEWDGIEKITIPKSMVWLP 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,325,306
Number of Sequences: 27780
Number of extensions: 180171
Number of successful extensions: 613
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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