Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D18
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    28   4.3  
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545...    27   7.4  
06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838     27   7.4  
01_06_1341 - 36434098-36436080                                         27   7.4  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           27   9.8  
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256...    27   9.8  

>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 348 YITISYCIIFLLTFKFPLSFK*F 416
           Y TISYC  FLL+  + +SF  F
Sbjct: 392 YWTISYCYFFLLSLLYVMSFTLF 414


>08_01_0627 +
           5451140-5451839,5452635-5452662,5452730-5452786,
           5453205-5453874
          Length = 484

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 235 FSILYQRYQAPTERWPILLELSMELCRHL 149
           F IL + + A  +++P+L EL + LC +L
Sbjct: 275 FDILDEGFSAAVKKFPLLEELELTLCDNL 303


>06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838
          Length = 99

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 244 WVRFSILYQRYQAPTERWPILLELSME 164
           W+RFS+L  +YQ   +R  I L+   E
Sbjct: 27  WIRFSLLASKYQISLDRNVITLDAEAE 53


>01_06_1341 - 36434098-36436080
          Length = 660

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 286 NGNLCVHTICANVMWVRFSILYQRYQAPTER 194
           N N  V T+CA+    R + L Q   APT+R
Sbjct: 49  NANHLVQTLCASGRLARAAALLQGLPAPTQR 79


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 398 RELKR*KKNNTIRYGNILHGEVTWFDIYCN 309
           R+++   K +++++G IL  E+TWF+   N
Sbjct: 549 RDIQYLNKLHSLKFGTILMFEITWFNQLSN 578


>03_01_0329 +
           2558726-2559112,2559214-2559449,2559537-2559663,
           2560190-2560326,2560467-2560626,2560828-2561106,
           2561750-2561920,2562636-2562717,2563397-2563623,
           2563682-2563727,2564199-2564281,2564376-2564492,
           2564965-2565036
          Length = 707

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 222 ISVTKLQQNGGLSCSNFPWSFVGTSEC 142
           +S  ++ + G L CS   WSF G+  C
Sbjct: 128 LSEGRIDETGCLQCSYHGWSFDGSGAC 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,474,396
Number of Sequences: 37544
Number of extensions: 191211
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)