Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D17
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    29   0.47 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    28   0.82 
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   4.4  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   5.8  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   5.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.6  

>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +3

Query: 105 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDXYTNKKAVEEFL 251
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 120 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVE 242
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 3   KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 170
           K ++  A +I   +++  +   +H   +D   V  + QK+      S   D D+  V DE
Sbjct: 28  KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87

Query: 171 YYKIGKDYDVEA 206
           + +I +++ ++A
Sbjct: 88  FMQIKEEFPMKA 99


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 436 ILQLSSAMILMDSFYQLLMKFIHNSSXIWTLYLRII 543
           ++ L+ A  L +  YQ        S  +WTLYL  +
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 105 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 254
           + R+KK+L+L +  D + V+DE Y   +  D   +++    K     FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 440 NIICVQELSLIXVHTSESGTLVEGFKVFSIVEQVEKSNS 324
           ++ICVQEL +      +   +VEGF  +    ++ K  S
Sbjct: 36  DVICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYS 74


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 408 NEGQFL-YAYYIAVIQRNDTHG 470
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,360
Number of Sequences: 5004
Number of extensions: 41014
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)