Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D17
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 32 0.32
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 32 0.32
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 30 1.3
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical... 29 3.0
AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical ... 29 3.0
AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical ... 28 4.0
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 27 9.2
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 31.9 bits (69), Expect = 0.32
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +3
Query: 75 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEF 248
F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E
Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88
Query: 249 LKLYRIGYLPKYYEFSIFYXKLREEAIALFHLFYYAKD 362
+K Y P + ++S EEAIA FH +Y K+
Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 31.9 bits (69), Expect = 0.32
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +3
Query: 75 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEF 248
F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E
Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88
Query: 249 LKLYRIGYLPKYYEFSIFYXKLREEAIALFHLFYYAKD 362
+K Y P + ++S EEAIA FH +Y K+
Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +3
Query: 129 SLFQDVDQVNVDDEYYKIGKDYDVEANIDXY----TNKKAVEEFLKLYR--IGYLPKY 284
S+ DV ++++DD+Y+ +G +D + D + AV F L+R +LP Y
Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 297 WRTHSTWEDN-RFCTISRILQQLSYWCSXRC 208
WRT + E + +F +SRIL+Q + W S C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572
>AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical
protein Y62E10A.16 protein.
Length = 496
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 322 RLLLFSTCSTMLKTLKPSTRVPLSLV 399
R+ F TCS +KT+K +PLS+V
Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315
>AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical
protein T06D4.4 protein.
Length = 684
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 21 AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLS---LFQDVDQVNVD 164
+GL+ +QS ++ + F K++DA+ + K+ L+ +F +D V D
Sbjct: 297 SGLVRRIQSGILITNSSSFFGKNLDAIIQQTHKRTLANYLIFHFIDAVTFD 347
>AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical
protein F37B4.7 protein.
Length = 424
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 297 IFYXKLREEAIALFHLFYYAKDFETFYKSA-AFARVHLNEGQFLYAYYIA 443
+FY IA F + Y K +T YKSA AF R L G+FL AY +A
Sbjct: 101 VFYGWATATEIAYF-AYIYVKVPKTEYKSATAFTRAALLVGRFL-AYALA 148
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 361 TLKPSTRVPLSLVCTXMRDSSCTHIILQLSSAMILMDSFYQLLMKFIH 504
T P T PLS+ CT ++ S ++ +++ + +DS + ++ +H
Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVH 302
>Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical
protein T04A8.9 protein.
Length = 249
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 120 KVLSLFQDVDQVNVDDEYYKIGKDYDVEAN 209
KVL L Q Q ++ YYK+ K + + N
Sbjct: 27 KVLGLAQSASQKDIKSAYYKLSKQHHPDTN 56
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 17 SSGAHCPRAIQCGVT 61
+SG HCPR + CG T
Sbjct: 28 TSGDHCPRVLSCGHT 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,990,353
Number of Sequences: 27780
Number of extensions: 230647
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -