Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D15
(373 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 2.9
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 25 3.8
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 5.0
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 24 6.7
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 24 6.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 6.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 24 6.7
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 24 8.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 24 8.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 24 8.8
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 141 FPVVTDRVRSDVKPSRTFVNFPVATYDEFHPDVPIFQI 254
FP V V S+ R V+ + Y EF+PD+ + +
Sbjct: 71 FPDVVKLVASENPEIRRLVHIYLLQYAEFNPDLALLSV 108
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 3.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 332 HTVTPTSETNEACMVTMRSLQDNHMDNLKYWDIGMKFVVGGNGKVYEGSG 183
HT + E + T++ L+D H + D+ KF + + KV+ G G
Sbjct: 378 HTCPVCRDGVEDVIETLKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFG 427
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 5.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 188 SGWLHVGAHTIGYNRKSIGISFVGNYNNKEATNQQLEAVRSLLQCGVKQGHLTSNY 21
+ + H+ +G + IS G YN + L +SLL G+ G L + Y
Sbjct: 342 AAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLL--GIPPGRLHTTY 395
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 249 EILGHRDEIRRRWQRESLR 193
E+L +RD+I R+QR SL+
Sbjct: 462 EVLIYRDDISGRFQRNSLK 480
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 302 EACMVTMRSLQDNHMDNLKYWDIGMKFVVGGNGKVYE 192
E C+ M +L DNH+ N I + GG K Y+
Sbjct: 112 EDCIQFMANLIDNHVKNCNKKKITLIATGGGAYKFYD 148
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 350 SLVIIQHTVTPTSETNEACMVTMRSLQDNHMDNLKYWDI 234
SL+II + + E +AC++ +R L+D +++ DI
Sbjct: 472 SLMIIISSSLGSDEIYKACLLFLRKLEDVSSESVLLGDI 510
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 189 TFVNFPVATYDEFHPDVPI 245
T+ +FP A +D+F P+ P+
Sbjct: 116 TYSSFPNALFDDFSPNNPL 134
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 23.8 bits (49), Expect = 8.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 48 HSALQQ*SHSFQLLVRCLFIVVVTDEADPDRFPVVTDRVRSDVKPSRTFVN 200
+S L++ F L++R +V +E DP PVVTD + S + R ++N
Sbjct: 218 NSLLKKSKIPFALVIRPYTSLV--EEDDP--VPVVTDTIISRCRRCRMYIN 264
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 300 SMHGDDAKFTRQSYG*FEILGHRDEIRRR 214
S DD ++ R+S G ++ +RD+ R R
Sbjct: 340 SSRSDDREYHRRSDGRYDRSNYRDDYRHR 368
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.8 bits (49), Expect = 8.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 182 IQNLRKLSRCHLRRISSRCPNISNYP 259
+ NL S+ LRR SR P SN P
Sbjct: 283 VDNLADFSQSPLRRGPSRFPTNSNVP 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,282
Number of Sequences: 5004
Number of extensions: 31773
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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