Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D14
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   0.81 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   5.7  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   7.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   10.0 

>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 129 GEDVFDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEK 305
           G++ ++  +   E  S+  EL++   D +RK  T   SSQ  +  E K+  P+ +F  K
Sbjct: 50  GKNGYENRKITEEGDSKSSELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDPI-AFQHK 107


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 239 IVSRHRRQRIQGDYTFNLL**EGHRCQSPDRSSDGASC 352
           ++S++  +R++ DY  NL+   GH   S + SS    C
Sbjct: 81  VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLC 118


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 LSSELRELDNMLADFYRKF 224
           L S+L EL ++L  FY+KF
Sbjct: 421 LESQLVELQSLLTQFYQKF 439


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +1

Query: 115  EAHTSARTSSIPVGSGPNSPASYASWXXXXXXXXXXXXXXXXXLKASKAT 264
            E  +SA TSS+     P S +S +SW                   +S AT
Sbjct: 931  ETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 165 ELSSELRELDNMLADFYRKFPT 230
           EL +EL   DN+LA   R+F T
Sbjct: 590 ELKAELNLRDNLLASMQREFET 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,575
Number of Sequences: 5004
Number of extensions: 45076
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)