Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D13
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   0.73 
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    27   0.73 
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   1.3  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   1.3  
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc...    25   3.9  

>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 222 QKIDEFLATVLAVARWTSIDCV 157
           +KI + L TV A+ RW S++C+
Sbjct: 452 EKIVQSLDTVQAIPRWASVNCL 473


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 67  LKLFVVVACVFAMGTVSAAPDPS--RMKSGKMNAVYAGPPRYCQHG-G*EFIYFLYSHV 234
           + L + + C++ +GT S +  PS  R+ SG +  +  G  R   HG    F Y +YS +
Sbjct: 213 ISLSMGLDCIYLIGTESRSEKPSALRLHSGDV-VIMTGTSRKAFHGKHCSFKYLIYSQL 270


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 206 NSSIFCILMYIITFVSYIHIILDSYF 283
           + SI C+L YI  F+ Y+ +  D YF
Sbjct: 295 SQSIECLLNYIEEFLKYLVLHKDEYF 320


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 141 HSRRVRRRRNGPHSEDASDNHK 76
           H R VR +RNGP  +D   N K
Sbjct: 244 HRRLVRSQRNGPLDKDLKPNSK 265


>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
           Dad5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 109 TVSAAPDPSRMKSGKMN 159
           T S++P PS+MKS +MN
Sbjct: 12  TSSSSPSPSQMKSFQMN 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,609
Number of Sequences: 5004
Number of extensions: 23393
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)