Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D13
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886     29   1.2  
10_06_0183 - 11562576-11562824,11563894-11564000,11564494-115645...    29   1.2  
03_01_0263 + 2038139-2038445,2038610-2038618,2038759-2039126,203...    29   1.2  
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460...    28   2.0  
09_04_0158 - 15197667-15198548,15201158-15201598                       26   6.2  
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928...    26   8.3  

>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
          Length = 334

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 129 VRRRRNGPHSEDASDNHK 76
           +RRRR  PH ED  D H+
Sbjct: 119 IRRRRRDPHREDDGDRHR 136


>10_06_0183 -
           11562576-11562824,11563894-11564000,11564494-11564572,
           11564659-11564745,11570563-11570817,11570922-11571071,
           11571163-11571798
          Length = 520

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 219 KIDEFLATVLAVARWTSIDCVHFATFHSRRVRRRRNGPHSED 94
           KIDE+ A ++A  R   +D    A  H+R+ RR+ N    E+
Sbjct: 233 KIDEWFAGLVAGFRALQLDIPGTAFHHARKCRRKLNSVFREE 274


>03_01_0263 +
           2038139-2038445,2038610-2038618,2038759-2039126,
           2039724-2039960,2040140-2040412
          Length = 397

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +1

Query: 97  FAMGTVSA---APDPSRMKSGKMNAVYAGPPR-----YCQHGG*EFIYFLYSHVYNHI 246
           F+M  V A     D S+++SG ++    GP       Y  HGG E   F+  H+++H+
Sbjct: 44  FSMAVVQANNLLEDQSQVESGALSMAEPGPQGTFIGVYDGHGGPETARFINDHMFHHL 101


>06_03_0124 -
           16942492-16945032,16945478-16945572,16945966-16946076,
           16946142-16946229
          Length = 944

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 252 DTNVIIYMRIQKID--EFLATVLAVARWTSIDCVHFATFHSRR 130
           +TN  +Y  +  I   +    +L V RW +++CVH     +RR
Sbjct: 85  ETNRKLYQELFPIQIMQMCGWLLKVVRWENLNCVHMEAHGNRR 127


>09_04_0158 - 15197667-15198548,15201158-15201598
          Length = 440

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 76  FVVVACVFAMGT--VSAAPDPSRMKSGKMNAVYAGPPRYCQ 192
           FV  A +F  GT  V+ APD      G ++ ++A  P Y Q
Sbjct: 390 FVAPAQMFGSGTAYVTQAPDKDDGSGGGVSVLFALEPEYIQ 430


>02_03_0408 -
           18692176-18692278,18692590-18692669,18692764-18692890,
           18694016-18694051,18695832-18696085
          Length = 199

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 88  ACVFAMGTVSAAPDPSRMKSGKMNAVYAGPPR 183
           A   A G    APDP        NA+YAG P+
Sbjct: 24  AAAGAQGGYYYAPDPYAAGMPPPNAIYAGAPK 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,849,663
Number of Sequences: 37544
Number of extensions: 147740
Number of successful extensions: 350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)