Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D13
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    30   0.45 
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    29   0.60 
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    29   1.0  
AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine re...    28   1.4  
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl...    26   5.5  
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl...    26   5.5  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    26   5.5  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AL117195-13|CAB55023.2|  455|Caenorhabditis elegans Hypothetical...    26   7.3  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine re...    25   9.7  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    25   9.7  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    25   9.7  

>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = +1

Query: 205 EFIYFLYSHVYNHICIIYTYNS*FIFL 285
           +F+ F Y H+++++C+++ Y   F+F+
Sbjct: 35  QFVIFTYIHIFSYLCVLFNY---FLFI 58


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
 Frame = +2

Query: 17  HIVTYFLRFIN-IKHEFH*NYLWLSLASSLWGPFRRRRTLLE*KVAK*TQSMLVHRATAS 193
           H++ + L  +N +K+ F  ++L+L++ SS+          +  K A    + ++  + A 
Sbjct: 121 HVILFLLAILNSLKYIF--SFLFLNIQSSVHKYLPHFTLCIILKDAVFGTACVL--SLAK 176

Query: 194 TVARNSSIFCILMYII--TFVSYIHIILDSYFYTLIKCITEINKNK 325
            +    S FCI+ YII   F++++  +L  + Y  I  + +INKN+
Sbjct: 177 YLNEEVSEFCIVCYIILFAFLNFVISVLTPFIY--IPIMIDINKNQ 220


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 141 EKWQNERSLCWSTALLPARWLGIHLFFVFSCI 236
           E WQ    +CW++    A W G  L F F  I
Sbjct: 237 ETWQKTTEICWNSVKC-ALWFGFRLVFWFGFI 267


>AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein38 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -1

Query: 261 CIYDTNVIIYMRIQKIDEFLATVLAVARWTSIDCVHFATFHSRRVR----RRRNGPHSED 94
           CI+D+NVI        +E +  VL VA   SI    FA F S ++      RR    SE 
Sbjct: 181 CIWDSNVIAITSTDSTEEDVICVLIVANCVSIG---FAIFISAKIAFYMLSRRMINQSEA 237

Query: 93  ASDNHK*F 70
               HK F
Sbjct: 238 TKKMHKKF 245


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 108 DRFGGAGPF*NEKWQNERSLCW 173
           +R  GAGPF    W N    CW
Sbjct: 43  ERKEGAGPFFGHPWWNHHHQCW 64


>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 173 VHRATASTVARNSSIFCILMYIITFVSYIHII 268
           VH  T   V RNS+++ +  Y+I FV+Y+ ++
Sbjct: 107 VHDDTMRMVRRNSALY-LGSYVIFFVTYLSLV 137


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 173 VHRATASTVARNSSIFCILMYIITFVSYIHII 268
           VH  T   V RNS+++ +  Y+I FV+Y+ ++
Sbjct: 107 VHDDTMRMVRRNSALY-LGSYVIFFVTYLSLV 137


>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform b protein.
          Length = 1590

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 199  HRAGSSAVDQHRLRSFCH 146
            HR GSS+V + R+R F H
Sbjct: 1491 HRNGSSSVSERRMREFKH 1508


>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform a protein.
          Length = 1604

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 199  HRAGSSAVDQHRLRSFCH 146
            HR GSS+V + R+R F H
Sbjct: 1505 HRNGSSSVSERRMREFKH 1522


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 221 CILMYIITFVSYIHIILDSYFYTLIKCI 304
           C++++ I  + ++  +L S+F +L+ CI
Sbjct: 803 CVMVFGICLIVWLIFLLGSFFLSLLACI 830


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 212 SIFCILMYIITFVSYIHIILDSYFYTLI-KCI 304
           SIFC+LMY +    ++++ L   +  +I  CI
Sbjct: 70  SIFCVLMYAVAVAYFLYLYLFVLYPNVINSCI 101


>AL117195-13|CAB55023.2|  455|Caenorhabditis elegans Hypothetical
           protein Y57A10A.20 protein.
          Length = 455

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 218 FCILMYIITFVSYIHIILDSY-FY 286
           +C+L Y +TF SY+   +D Y FY
Sbjct: 197 YCLLQYYLTFDSYLPGEVDDYQFY 220


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 44  INIKHEFH*NYLWLSLASS 100
           I+++ EFH  Y+W+ +A+S
Sbjct: 143 IDLEQEFHVAYVWIQMANS 161


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 44  INIKHEFH*NYLWLSLASS 100
           I+++ EFH  Y+W+ +A+S
Sbjct: 143 IDLEQEFHVAYVWIQMANS 161


>AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein33 protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 261 CIYDTNVIIYMRIQKIDEFLATVLAVARWTS 169
           C++D NV+         E L ++L +  W S
Sbjct: 180 CLWDDNVVAVFDSGSQSEHLVSILTILNWVS 210


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 44  INIKHEFH*NYLWLSLASS 100
           I+++ EFH  Y+W+ +A+S
Sbjct: 143 IDLEQEFHVAYVWIQMANS 161


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 44  INIKHEFH*NYLWLSLASS 100
           I+++ EFH  Y+W+ +A+S
Sbjct: 143 IDLEQEFHVAYVWIQMANS 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,076,690
Number of Sequences: 27780
Number of extensions: 132211
Number of successful extensions: 445
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)