Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D13
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   2.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   6.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              20   8.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    20   8.9  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 279 YESRIICIYDTNVIIYMRIQKIDEFLATVLAV 184
           YE  +   Y TN IIY +   + E    VL +
Sbjct: 137 YEESLFVPYITNFIIYSKRMDVLEATLRVLCM 168


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 174  TSIDCVHFATFHSRRVRRRRNG 109
            T+IDC   + ++   V+ ++NG
Sbjct: 961  TTIDCSTQSEYYELEVKDQKNG 982


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 73  ILVKFMFNINKS*KIRYNM 17
           +L KF     K+ KIRYN+
Sbjct: 75  VLEKFNVMDKKNGKIRYNL 93


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 287 YKNMNQELYVYMIQM 243
           YKN N++LY  +I +
Sbjct: 329 YKNYNKKLYYNIINI 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,791
Number of Sequences: 438
Number of extensions: 1729
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)