Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D10
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    26   7.2  
02_04_0192 + 20795659-20796309                                         26   7.2  

>05_03_0031 -
           7534327-7534480,7535546-7535649,7535724-7535793,
           7535889-7535932,7536042-7536146,7536223-7536344,
           7536807-7536894,7536966-7537052,7537718-7537786,
           7537859-7538188,7539777-7539824,7540003-7540069,
           7540150-7540208,7541220-7541453,7541536-7541601,
           7541684-7541883,7542104-7542197,7542295-7542414,
           7542596-7542703,7542808-7542871,7543378-7543409,
           7546049-7548007
          Length = 1407

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 146 RVRRQAGELTINSDGTSGAMVKVPIPWKRKSQAQCSWLR 262
           R ++    L+  +  T G    +P  W  KS ++C W R
Sbjct: 18  RKKKNHNSLSGKAPPTRGNCDSLPPVWNAKSASECHWTR 56


>02_04_0192 + 20795659-20796309
          Length = 216

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 305 SSCSGPQCNLVSEINGAKSTELVIFVSRGSVP*P*HLRFHQN*L*VHPLAGAPWNWSTAP 126
           S+  G   +  S  N + S+  V F+   + P P H RF  + L     +  P++W   P
Sbjct: 31  SAGGGGSSSSFSSTNSSSSSPFVSFLPPPTSPSPFH-RFLPSPL---RASSVPFSWEHRP 86

Query: 125 AVPRT 111
            +P+T
Sbjct: 87  GIPKT 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,904,843
Number of Sequences: 37544
Number of extensions: 155238
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)