Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D10
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81135-2|CAB03455.1|  122|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical ...    26   6.6  

>Z81135-2|CAB03455.1|  122|Caenorhabditis elegans Hypothetical
           protein W01G7.3 protein.
          Length = 122

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 156 GKRVNLQLILMEPQVLWSRYRSPGNENHKLSALGSVDLTNQITLGAATAGLVYDNV 323
           G  + +QL L +P+VL++ Y++P    HK+  L  +  TN  T   A    + D V
Sbjct: 42  GNMLKIQL-LKDPEVLFAGYKNPHPLEHKI--LLRIQTTNNTTPADALTTAITDLV 94


>AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical
           protein Y34B4A.8 protein.
          Length = 604

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 258 SVDLTNQITLGAAT-AGLVYDNVNRHGATLT 347
           S++ +N   + A T  G++YD +N HG  LT
Sbjct: 383 SMNASNLAIVFAPTMTGMIYDGMNTHGVKLT 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,088,559
Number of Sequences: 27780
Number of extensions: 118247
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)