Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D08
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 2.1
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 2.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 24 4.8
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 24 4.8
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 24 4.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 24 4.8
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 24 4.8
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 6.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 24 6.4
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 24 6.4
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 24 6.4
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 23 8.5
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 23 8.5
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 23 8.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 23 8.5
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 160 WTNALVKVAEF-RWIRVAHDRSSWRSLEKTHVQ*WTSFCRTVR 285
WT+ V EF RW+ + RS H+ W +CR R
Sbjct: 1532 WTDFFVDYREFIRWLSRGNSRS--------HINSWIGYCRLTR 1566
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 214 DRSSWRSLEKTHVQ*WTSFCRTVRL--WNRL 300
DRS+W+S+ + H + +TSF + + + W +L
Sbjct: 54 DRSNWQSVLEKHRKTYTSFVQELLIDPWRKL 84
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 287 NLTVRQKDVHYWTWV 243
N V +DV YWTW+
Sbjct: 100 NSYVMNQDVVYWTWI 114
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 4.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Frame = +1
Query: 97 LLNGYHVL---DLNGY-----HVLQYAARWTNALVKVAEFRWIRVAHDR 219
L+N H L DLNG LQY + ++K + WIR +D+
Sbjct: 477 LVNSGHTLRTLDLNGMSFVTDEALQYIVNFPLPMLKALDVSWIRGMNDK 525
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 4.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 230 LQDDRSCATRIHRNSATLTRALVHLAAYC 144
L D C HR+ T T A+ LA++C
Sbjct: 88 LDDYVLCKEDFHRDLVTATAAISALASFC 116
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.2 bits (50), Expect = 4.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 260 HYWTWVFSKDLQDDRSCATRIHR 192
++WTW + K +DDR I R
Sbjct: 351 YHWTWKYFKRRRDDRIAYMHIIR 373
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 24.2 bits (50), Expect = 4.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 188 SATLTRALVHLAAYCST 138
SAT+ A H+AAYC++
Sbjct: 159 SATIVNAPQHIAAYCAS 175
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 298 DDSITSQCDKKTSTTGHGFSPKISRTTGHAQPVSI 194
DDS+ S +K+ K++ + H + VSI
Sbjct: 142 DDSLLSSSEKEVDEEADKLLEKVAEESSHPESVSI 176
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 6.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 297 TIP*PHSATKRRPLLDMGFLQRSPGRPVMRNPYPSEFRDLNQGVGPP 157
T P P + +RP +++G P P +R PS+ D Q +G P
Sbjct: 564 TSPSPSISVTQRPAVNVG----PP--PYVRPSAPSKLPDTRQSIGDP 604
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 104 FNNPLTPSSIGSASNVSSPLPLKFNNS 24
F LTPS+ S+ S+P P+ N S
Sbjct: 136 FQFSLTPSTTPPPSSASAPFPINSNIS 162
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 107 PFNNPLTPSSIGSASNVSSPLP 42
P +PL ++ S SN+S+PLP
Sbjct: 364 PPRHPLNATNGTSQSNISTPLP 385
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 8.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 155 AAYCSTW*PFKSSTW*PFNNPLTPSSIGSASNVSSPLPLKF 33
AAY S SS+ N T S G+AS +PLKF
Sbjct: 210 AAYDSVGIDTLSSSLDALRNGGTMVSFGNASGAIDAIPLKF 250
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 30 VKLKWQWARHIARRTDARWGQRIIEWL 110
+KL + R +ARRTD+R+ + I++ L
Sbjct: 25 LKLLVKLYRFLARRTDSRFNKAILKRL 51
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 30 VKLKWQWARHIARRTDARWGQRIIEWL 110
+KL + R +ARRTD+R+ + I++ L
Sbjct: 25 LKLLVKLYRFLARRTDSRFNKAILKRL 51
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -3
Query: 281 TVRQKDVHYWTWVFSKD---LQDDRSCATRIH-RNSATL 177
++R +DVH WV K+ L++ +S R++ RN+ ++
Sbjct: 275 SIRLRDVHPIRWVEDKEFQKLEEGKSVCLRLYQRNNGSI 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,550
Number of Sequences: 5004
Number of extensions: 30540
Number of successful extensions: 98
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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