Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D08
(319 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 43 6e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 36 0.005
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 36 0.005
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 36 0.005
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 36 0.005
Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical p... 29 0.96
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p... 27 3.9
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical pr... 26 5.1
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 26 5.1
U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical pr... 26 5.1
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 26 5.1
AC024852-1|AAK66027.1| 257|Caenorhabditis elegans Hypothetical ... 26 6.8
Z81124-5|CAB03374.1| 328|Caenorhabditis elegans Hypothetical pr... 25 8.9
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 25 8.9
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 25 8.9
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 25 8.9
AF047657-14|AAK18952.1| 331|Caenorhabditis elegans Serpentine r... 25 8.9
AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine re... 25 8.9
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 3 KVTDISLRIVKLKWQWARHIARRTDARWGQRIIEWLPR 116
K+ D + I K K WA H+ARRTD RW + +W PR
Sbjct: 110 KLRDPLIHIKKRKLGWAGHVARRTDGRWTTLMNDWCPR 147
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 27 IVKLKWQWARHIARRTDARWGQRIIEWLP 113
+ K K WA H+ARR D RW + EW P
Sbjct: 807 VKKRKLGWAGHVARRKDGRWTTLMTEWRP 835
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 27 IVKLKWQWARHIARRTDARWGQRIIEWLP 113
+ K K WA H+ARR D RW + EW P
Sbjct: 982 VKKRKLGWAGHVARRKDGRWTTLMTEWRP 1010
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 27 IVKLKWQWARHIARRTDARWGQRIIEWLP 113
+ K K WA H+ARR D RW + EW P
Sbjct: 721 VKKRKLGWAGHVARRKDGRWTTLMTEWRP 749
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 27 IVKLKWQWARHIARRTDARWGQRIIEWLP 113
+ K K WA H+ARR D RW + EW P
Sbjct: 333 VKKRKLGWAGHVARRKDGRWTTLMTEWRP 361
>Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical
protein Y57G11C.51 protein.
Length = 160
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 131 PFKSSTW*PFNNPLTPSSIGSASNVSSP 48
P +S W P +P TPSS S+S SSP
Sbjct: 112 PKRSPRWSPQPDPSTPSSSTSSSTSSSP 139
>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
protein ZK328.7b protein.
Length = 1098
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 181 VAEFRWIR--VAHDRSSWRSLEKTHVQ*WTSFCRTVRLWNR 297
+A+F +IR AH +S+ +L T+ Q W + R V L+ R
Sbjct: 968 LADFYYIRSEAAHASTSYTTLLNTNPQHWHALSRVVELFCR 1008
>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical protein
ZK328.7a protein.
Length = 1332
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 181 VAEFRWIR--VAHDRSSWRSLEKTHVQ*WTSFCRTVRLWNR 297
+A+F +IR AH +S+ +L T+ Q W + R V L+ R
Sbjct: 968 LADFYYIRSEAAHASTSYTTLLNTNPQHWHALSRVVELFCR 1008
>Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical
protein R06C7.1 protein.
Length = 945
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -2
Query: 285 PHSATKRRPLLDMGFLQRSPGRPVMRNPYPSEFRDLNQGVGPPCCV 148
PH P+ M + PG P P++ + L+Q G C+
Sbjct: 3 PHPPQPHPPMPPMPPVTAPPGAMTPMPPVPADAQKLHQSTGNDACI 48
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 304 QEDDSITSQCDKKTSTTGHGFSPKISRTTGHAQPVSIGIPRP*P 173
++D I + + KT + + RTT A P +IG+P+P P
Sbjct: 1089 EKDKKIKAAAESKTKAK----ATRKPRTTKKAAPATIGMPQPPP 1128
>U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical
protein W09C3.8 protein.
Length = 312
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 45 QWARHIARRTDARWGQRIIEWLPRTGFEW 131
++A HI RR RW + EW P W
Sbjct: 215 RFAGHILRRDPNRWTKICTEWDPSHNKNW 243
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 318 EGHADRKTIP*PHSATKRRPLLDMGFLQRSPGRPVMRN 205
+G+ ++ P P S ++PLL Q P RP+++N
Sbjct: 1487 QGYMQQQHPPMPVSQQFQQPLLQRPASQPPPARPIVKN 1524
>AC024852-1|AAK66027.1| 257|Caenorhabditis elegans Hypothetical
protein Y71F9AM.6 protein.
Length = 257
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 123 FEWLPRTAIRSKVDQRP 173
FEW+PR A+++K + P
Sbjct: 226 FEWIPRDAVKNKEKRSP 242
>Z81124-5|CAB03374.1| 328|Caenorhabditis elegans Hypothetical
protein T21B4.7 protein.
Length = 328
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 224 PGDLWRKPMSSSGRLFVAL*GYGIVFLSAC 313
PG W ++SS +L + G ++F S+C
Sbjct: 197 PGTFWDTYLTSSFKLILLATGLQVLFFSSC 226
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 50 G*THCSQNRCSMGST 94
G HC+QN C+ GST
Sbjct: 154 GIDHCAQNECAEGST 168
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 50 G*THCSQNRCSMGST 94
G HC+QN C+ GST
Sbjct: 154 GIDHCAQNECAEGST 168
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 50 G*THCSQNRCSMGST 94
G HC+QN C+ GST
Sbjct: 154 GIDHCAQNECAEGST 168
>AF047657-14|AAK18952.1| 331|Caenorhabditis elegans Serpentine
receptor, class h protein127 protein.
Length = 331
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 172 LVKVAEFRWIRVAHDRSSWRSLEK 243
+VKV E RW +A + W+ + K
Sbjct: 120 MVKVYENRWFLLARNLKKWKKIRK 143
>AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein60 protein.
Length = 300
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 185 ATLTRALVHLAAYCSTW*PFKSSTW 111
+ LT L+ + +C+ W P K W
Sbjct: 90 SVLTHFLISINRFCAVWVPLKYEKW 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,362,741
Number of Sequences: 27780
Number of extensions: 179052
Number of successful extensions: 449
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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