Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D06
         (112 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772...    27   1.6  
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529...    27   1.6  
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648     25   6.6  
12_01_0002 - 4477-6144,6571-7440                                       25   8.7  
11_01_0003 - 6099-7766,8193-9062                                       25   8.7  
07_03_1511 + 27276736-27276998,27277090-27277267,27277740-272784...    25   8.7  

>07_03_1528 +
           27474973-27475289,27476890-27477073,27477081-27477261,
           27477270-27478206,27478384-27479035,27479352-27479798
          Length = 905

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 101 TVXRRDGFAGQWGSRDASSTQRLAFIK 21
           T+ RR GF GQWG    +     AF K
Sbjct: 359 TLVRRGGFTGQWGVESVNLYYTYAFEK 385


>07_03_1525 +
           27448257-27448582,27450741-27450973,27451280-27452919,
           27453129-27453575
          Length = 881

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 101 TVXRRDGFAGQWGSRDASSTQRLAFIK 21
           T+ RR GF GQWG    +     AF K
Sbjct: 268 TLVRRGGFTGQWGVESVNLYYTYAFEK 294


>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
          Length = 857

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 65  GSRDASSTQRLAFIKFRWGH 6
           G RDAS  QRL F  F  GH
Sbjct: 607 GRRDASGPQRLCFNCFEPGH 626


>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 37  RCVDEASREPH*PANP 84
           RCV EA+ EPH P +P
Sbjct: 682 RCVAEAAGEPHFPWSP 697


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 37  RCVDEASREPH*PANP 84
           RCV EA+ EPH P +P
Sbjct: 682 RCVAEAAGEPHFPWSP 697


>07_03_1511 +
           27276736-27276998,27277090-27277267,27277740-27278436,
           27278674-27278756,27278790-27279293,27279504-27279920
          Length = 713

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 89  RDGFAGQWGSRDASSTQRLAFIKFRWG 9
           R GF GQWG    +     AF K+  G
Sbjct: 214 RAGFTGQWGVESINLYYEYAFDKYMEG 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,242
Number of Sequences: 37544
Number of extensions: 24833
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 17
effective length of database: 14,155,100
effective search space used: 268946900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)