Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D06
         (112 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
            protein K10B4.1 protein.
          Length = 1210

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 92   RRDGFAGQWGSRDASSTQRLAFIKFRWGH 6
            R+DG+   + + DAS  Q  A   FR+GH
Sbjct: 958  RQDGYYDGYENCDASILQPFATAAFRFGH 986


>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical protein
            T06D8.10 protein.
          Length = 1490

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 110  AELTVXRRDGFAGQWGSR-DASSTQRLAFIKFRWGH 6
            A+  V +++G+ G + +  DAS +Q  A   FR+GH
Sbjct: 1140 AQNLVPKKNGYFGGYDNTCDASISQPFATAAFRFGH 1175


>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical protein
            T06D8.10 protein.
          Length = 1490

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 110  AELTVXRRDGFAGQWGSR-DASSTQRLAFIKFRWGH 6
            A+  V +++G+ G + +  DAS +Q  A   FR+GH
Sbjct: 1140 AQNLVPKKNGYFGGYDNTCDASISQPFATAAFRFGH 1175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,062
Number of Sequences: 27780
Number of extensions: 20682
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)