Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D03
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   2.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   2.6  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   3.5  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.6  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.6  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   8.0  

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 516 ILLMALQQVSLVWHAAGM*EWWITTYGTGVFRGKVWFGCLALHC 385
           I L + +Q  ++W  +   E W+     GV     WF CL L C
Sbjct: 329 IYLTSSRQAFVLWVYSLDKELWLQLDMLGVLNHGSWFKCLVLDC 372


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 323  FSGESVENEVPSYDFPFVSRSQWSARQPN 409
            FS   + ++VP ++F F+SR+ W+A   N
Sbjct: 1006 FSINDILSQVPVFEFIFLSRNFWTASLGN 1034


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 305 KAYPSIFSGESVENEVPSYDFP-FVSRSQWSARQPNQTL 418
           + Y    SG+SVE E P   FP   +R+ W   + +Q+L
Sbjct: 38  QVYRCPISGKSVEYECPESGFPTHCNRTHWEQDKIHQSL 76


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 556  WIPFWRQQRWNSIRGERMVDFRRTCAAF 639
            W  F+   RW +IR E + D    C AF
Sbjct: 1120 WFMFFSSSRWQAIRVECIGDLIIFCTAF 1147


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 267 NILNIITFNTIHKTRLLQYFLN 202
           N+L++ TFN + K RL QY L+
Sbjct: 102 NVLSLNTFNILGKKRLSQYTLD 123


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = -1

Query: 137 FLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGDSKTVVRDLI 9
           ++ D +   H ++ ++  Y +     ++YH + +   V+ DL+
Sbjct: 293 WMADYHHPTHNYLMDRSRYPDFNARKLVYHAYVEQSAVINDLL 335


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 335 SVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKAMRS 514
           S ++     D PF   +Q  +  PN+     +P+ Y V  HS   A+  + E   ++MRS
Sbjct: 320 SFQSSYNDADRPFQVGAQTQST-PNRISRSDSPIVYDVDTHSEDNASTASSEAISQSMRS 378

Query: 515 MQ 520
            Q
Sbjct: 379 FQ 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,104
Number of Sequences: 5004
Number of extensions: 67576
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)