Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_D03
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0581 + 18930601-18930777,18930856-18930965,18931037-189313... 31 0.67
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467... 31 1.2
09_06_0081 + 20745627-20748144,20748211-20748308 29 3.6
08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574... 29 3.6
06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121 29 4.8
02_05_0979 + 33268294-33269595 29 4.8
03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313... 28 6.3
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105... 28 8.3
01_06_0300 + 28312590-28313939 28 8.3
>10_08_0581 +
18930601-18930777,18930856-18930965,18931037-18931307,
18931403-18931541,18932410-18932630,18932723-18932769,
18933390-18933755,18934049-18934127,18934697-18934890,
18935305-18935422
Length = 573
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 515 MQNFHMDGHQWWDIGYHFG---VSSDGTVYEGRG--WSTLGAHALHFNSVSIGICLIGDW 679
MQ++HMDG+ ++ +G +G S GT +G G ST+ + + +V + + +G W
Sbjct: 430 MQSYHMDGYAFFVVGMDYGEWTEDSRGTYNKGDGVARSTVQVYPGAWAAVLVSLDNVGVW 489
Query: 680 RV 685
V
Sbjct: 490 NV 491
>06_03_0505 +
21545547-21545813,21546075-21546167,21546535-21546747,
21548933-21549124,21549217-21550197
Length = 581
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = +2
Query: 440 YVVIHHSYIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFG 571
YV+ H++ + + + + +H+ GH +W +GY G
Sbjct: 445 YVLAHNATVDVVLQNANALARNVSEVHPWHLHGHDFWVLGYGDG 488
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 356 SYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIP 469
S+D+ VS S + P +L L++P P++ + H P
Sbjct: 472 SFDYDGVSSSSSTPHVPTTSLALRSPAPHLRVRHMPAP 509
>08_01_0664 +
5741111-5741113,5741491-5741658,5741741-5741864,
5742078-5742169,5742254-5742352,5742476-5742589,
5743190-5743254,5743342-5743467,5743870-5743945,
5744502-5744594,5744944-5744994,5745084-5745182
Length = 369
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 634 QRMCA*SRPSSPLVYCSIAADAKMVSNIPPLMTVHMEVLHTPHGFTASLSSVACRWYVR 458
+R+ A P YC+ A+ IP ++ +H + FTA V C W +R
Sbjct: 239 ERLLADMPPDEAAKYCAENQIARQAIVIPKIIKTGFAAIHLIYFFTAGPDEVKC-WQIR 296
>06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121
Length = 220
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -1
Query: 152 SKRILFLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGD---SKTVVRDL 12
S+ I+F + + R V +RN SY H+ I G G+ SKT RDL
Sbjct: 170 SECIIFRVSVS-RYQVTVRNHQSYSGHFTEVKIVSGLGNAVGSKTSARDL 218
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 550 PPLMTVHMEVLHTPHGFTASLSSVACRWYV--RVVDNHIRY-WSFQRQGLVWLPRT 392
PP+ + M H PHG L+S +C V ++ +H Y W+ + ++ LP T
Sbjct: 102 PPVEEI-MTARHLPHGTIFPLASKSCHGLVLLKITGHHTHYLWNPSTRHILRLPGT 156
>03_06_0438 -
33917678-33918084,33929568-33930402,33931055-33931335,
33931358-33931451,33931549-33931857
Length = 641
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 461 YIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFGV 574
Y+P + ET S +F + WWD+G GV
Sbjct: 229 YLPCRMSSSETSSSTSSSGTHFRDEWSTWWDMGAIVGV 266
>07_01_0142 +
1054495-1054644,1054767-1055971,1056102-1056180,
1056619-1056822
Length = 545
Score = 27.9 bits (59), Expect = 8.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 515 MQNFHMDGHQWWDIGYHFG 571
+Q++H+DG+ +W +GY G
Sbjct: 438 LQSWHLDGYDFWVVGYGNG 456
>01_06_0300 + 28312590-28313939
Length = 449
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 146 RILFLLDLYIRAHVFIRNKCSYQN-HYVVYMIYHGFGDSKTVVRDL 12
R+ F+ +L+ + S+ + H++ Y++Y G +S T++ L
Sbjct: 109 RVTFVCELHAAEENLVVLSASFDHAHHIYYLVYDGIDESLTMIPSL 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,775,844
Number of Sequences: 37544
Number of extensions: 430026
Number of successful extensions: 1134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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