Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D03
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   6.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 303 TFIIIVTNNPIDNILNIITFNTIHKTRLLQ 214
           TF+ ++  N + + LN+++  T +  RLLQ
Sbjct: 81  TFLAVIRYNGVPSSLNVVSDKTGNGGRLLQ 110


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 135 KQYSFRVSLMSKVLSSQQLPYCYSRNIVTIEFCV 236
           K   F +    KVL+ ++ P+ Y R I   E C+
Sbjct: 404 KPEGFMIPTHLKVLTIEEKPFVYVREIAFSESCL 437


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 303 TFIIIVTNNPIDNILNIITFNT 238
           TF+II+  N + + LN+IT  T
Sbjct: 74  TFVIIMKFNGVPSSLNVITNKT 95


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 303 TFIIIVTNNPIDNILNIIT 247
           TF+ I  NN + + LN++T
Sbjct: 82  TFVTIERNNGVPSSLNVVT 100


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 262 IKHYNF*HDTQNSIVTIFLE 203
           IKH N  H+T+N + T+  E
Sbjct: 221 IKHINTRHNTKNGMKTLLSE 240


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 410  QTLPLKTPVPYVVIHHSY 463
            Q LP  +P P + ++H+Y
Sbjct: 1283 QQLPPSSPQPRLTVNHAY 1300


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 315 HQFFQVNQW 341
           H+FFQV++W
Sbjct: 66  HKFFQVHEW 74


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +2

Query: 542 QWWDIGYHFGVSSDGTVYEGR 604
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +2

Query: 542 QWWDIGYHFGVSSDGTVYEGR 604
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 535 RSSMVGYWIPFWRQ 576
           R +    WIP WRQ
Sbjct: 415 RQTQTEVWIPKWRQ 428


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 348 SFSTDSPEKIDGY-AFTFIIIVTNNPIDNILNIITFNTIHKTRLLQYFLNNSRA 190
           ++  + P  +D +   TF+ I+ N+ + + LN+I+    +   LL+ + N S A
Sbjct: 61  NYKNNVPIDVDRWNGKTFVTILRNDGVPSSLNVISNKIGNGGPLLEPYPNWSWA 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,992
Number of Sequences: 438
Number of extensions: 4877
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)