Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_D01
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.013
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.0  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   4.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.5  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   6.0  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   7.9  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 LILTAATCWLFWLCAYMAQMNPLIGP 242
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 419 ISTLLCLIIYLFIRNDRFITWTYYTKEVSLLFGQVLHLGPVHW 291
           + TLL L I    R   F  W +      L++   LHL P HW
Sbjct: 265 LQTLLVLGIREIGRGLTFKGWLFSGMAFRLVYDMGLHLDPDHW 307


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 362 TWTYYTKEVSLLFGQ 318
           TWTYY K++ ++ G+
Sbjct: 86  TWTYYVKKIRIILGR 100


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 158 LDN-PSVRSLRSEERTYYSYDSPKHGENSYGDK 63
           +DN  SVR++ S+ +T  + ++P H  N Y  K
Sbjct: 1   MDNWNSVRNVSSDRQTSKTSENPPHTSNEYSGK 33


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 198 WLCAYMAQMNPLIGPRLDNETLIWISRTW 284
           W   Y+ +  P+IG   D+++L ++ + W
Sbjct: 519 WFDIYVKEYIPVIGNTKDHQSLTFLQKRW 547


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 27  KTSKKYVKMGFSFVPITIFTVFWGVIGI 110
           KT+KKY  +G+  VP+ + TV  G + +
Sbjct: 47  KTNKKYYILGYFLVPL-LLTVIAGFVRV 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,429
Number of Sequences: 5004
Number of extensions: 49581
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)