Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C23
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0239 + 21637451-21638098,21638172-21638714                       29   1.5  
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031...    28   2.0  
01_06_0530 + 30035854-30036765                                         27   6.0  
08_02_0429 + 17049775-17049813,17049885-17050547                       26   7.9  
04_03_0456 + 16096467-16096585,16096687-16096965,16097087-160971...    26   7.9  

>11_06_0239 + 21637451-21638098,21638172-21638714
          Length = 396

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 169 SCHISLLLKLVPTIKSLHCTTHIKDRRTTNKTGATFI 59
           +CH  LLL     ++ + CT     RR     G T++
Sbjct: 129 TCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWV 165


>04_04_0423 -
           25102305-25102489,25102571-25102717,25103079-25103150,
           25103305-25103327,25103792-25103863,25104064-25104112,
           25104344-25104415,25104880-25104951,25105281-25105352,
           25106569-25106640,25106810-25106881,25106974-25107048,
           25107324-25107470,25107598-25107805,25108361-25108489,
           25108563-25108769
          Length = 557

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 284 VCVVQIT---GNYTLYNLLPRIRKENFFNSVLQWD 189
           +CV ++    G Y+ ++LLPR   +  FN +++W+
Sbjct: 62  LCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWN 96


>01_06_0530 + 30035854-30036765
          Length = 303

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 156 LIWQEKADYNAIPLKNRVKEVFFSD--PGQQIIKGVIARDLDHTDAI 290
           ++W +     A+ L++RV EVF  D  P   I KGV+   LDH   +
Sbjct: 151 VLWAQDRRALALALQSRVAEVFAVDIHPAAAIGKGVL---LDHATGV 194


>08_02_0429 + 17049775-17049813,17049885-17050547
          Length = 233

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 141 SFNNRLIWQEKADYNAIPLKNRVKEVFFSD----PGQQIIKGVIARDL 272
           +F+N++   EK ++      N+V +VF+ +    PG  I++ +  RD+
Sbjct: 137 NFSNKIHTGEKIEHEPFVFANQVDQVFYIEDHLNPGWSIVRKMKPRDV 184


>04_03_0456 +
           16096467-16096585,16096687-16096965,16097087-16097125,
           16110110-16110773
          Length = 366

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 141 SFNNRLIWQEKADYNAIPLKNRVKEVFFSD----PGQQIIKGVIARDL 272
           +F+N++   EK ++      N+V +VF+ +    PG  I++ +  RD+
Sbjct: 270 NFSNKIHTGEKIEHEPFVFANQVDQVFYIEDHLNPGWSIVRKMKPRDV 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,747,243
Number of Sequences: 37544
Number of extensions: 183912
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)