Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C23
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine rece...    27   5.4  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    26   9.5  
U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    26   9.5  
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    26   9.5  

>U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine
           receptor, class t protein73 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 225 SDPGQQIIKGVIARDLDHTDAIASITAGGVGFPYVYYKA 341
           S+P   +++ V A D+   D + S+ A  V F Y+Y+KA
Sbjct: 191 SNPLSAVLRSVSA-DISLIDVVFSLFAHLVIFSYIYFKA 228


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 141 SFNNRLIWQEKADYNAIPLKNRVKEVFFSDPGQQIIKGVIARDLDHTDAIAS 296
           S++N  +WQ K+D N   +  +VKE    +   Q+I+  ++  L  T A  S
Sbjct: 644 SYSNAHMWQHKSDINVASVHVQVKE----EANAQMIRHRVSNILKSTGATHS 691


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 217 TSLTLFFNGMAL*SAFSCHISLLLKLVPTIKS 122
           T++ ++FNG      +SC +SL  K  P+  S
Sbjct: 12  TAILVYFNGFFFSEFWSCEMSLSRKAAPSTSS 43


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 72  PVLFVVLLSLMCVVQCRDLIVGTSFNNRL 158
           P+LF++L  L+    C D +VG  + +RL
Sbjct: 300 PILFIILAGLVLTTTCID-VVGAYYIDRL 327


>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +3

Query: 3   SDRSLNRITHSIYTINFVK-MKVAPVLFVVLLSLMCVVQCRDL-----IVGTSFN 149
           SD   +R+    Y I  +  +  A VLFV+ L+L C+V C  +     I G SFN
Sbjct: 479 SDYVFSRLGSEWYIIMVLAPITFAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFN 533


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +3

Query: 3   SDRSLNRITHSIYTINFVK-MKVAPVLFVVLLSLMCVVQCRDL-----IVGTSFN 149
           SD   +R+    Y I  +  +  A VLFV+ L+L C+V C  +     I G SFN
Sbjct: 393 SDYVFSRLGSEWYIIMVLAPITFAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFN 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,655,406
Number of Sequences: 27780
Number of extensions: 176984
Number of successful extensions: 487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)