Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C21
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    28   0.53 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   0.93 
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    26   2.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   5.0  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   5.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   8.7  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +1

Query: 220  LYIVGKSYDTLNVLVISMISLLHIVCILTFKC 315
            LY VG  YD    LV     LLH   IL  KC
Sbjct: 974  LYSVGPEYDDDKYLVQKRADLLHSAAILLEKC 1005


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -1

Query: 275 IIDITSTFNVS*LFPTIYKKILDLHAYNTIRLSLHFIY 162
           +ID  S+++   +F     KI  +H + T+ ++LH+++
Sbjct: 649 VIDFNSSYSRLIIFSPDSPKIQSIHIFKTLPVALHYLH 686


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  SKYTLPTYLFYTYNQYEYCNYLLDVIY 8
           SK     ++ +  N  ++C YLLDV Y
Sbjct: 73  SKVATKCWVDFVENSDQFCEYLLDVAY 99


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -2

Query: 337 KNVNNKSNI*MLKYTLYVEVKSSILQVHLMYRNFFPQYTKRF 212
           ++ N+  ++    ++ Y E  S  L +  +++N  P Y+K F
Sbjct: 203 ESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPSYSKTF 244


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 61  FYTYNQYEYCNY 26
           FY +N YE+C Y
Sbjct: 220 FYAFNMYEWCGY 231


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 49   NQYEYCNYLLDVI 11
            + YE CNYLL+++
Sbjct: 2200 SSYEICNYLLEIV 2212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,544
Number of Sequences: 5004
Number of extensions: 26352
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)