Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C21
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical pr...    30   0.61 
Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical pr...    30   0.61 
AF005246-1|AAB95119.1|  556|Caenorhabditis elegans voltage-depen...    30   0.61 
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    29   1.9  
AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine r...    29   1.9  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical p...    27   4.3  
Z83119-2|CAB05579.2|  608|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF043697-5|AAB97557.2|  230|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z81119-7|CAB03338.2|  310|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine rec...    26   10.0 
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    26   10.0 

>Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 219 FVYCGKKLRYIKCTCNIDDFTSTYSVYFNIQM 314
           FV+C  K+R+ K   N+ D  +T S Y +  M
Sbjct: 280 FVFCPSKIRFFKSPLNMIDLVATLSFYADAMM 311


>Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 219 FVYCGKKLRYIKCTCNIDDFTSTYSVYFNIQM 314
           FV+C  K+R+ K   N+ D  +T S Y +  M
Sbjct: 280 FVFCPSKIRFFKSPLNMIDLVATLSFYADAMM 311


>AF005246-1|AAB95119.1|  556|Caenorhabditis elegans
           voltage-dependent potassium channelalpha subunit
           protein.
          Length = 556

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 219 FVYCGKKLRYIKCTCNIDDFTSTYSVYFNIQM 314
           FV+C  K+R+ K   N+ D  +T S Y +  M
Sbjct: 278 FVFCPSKIRFFKSPLNMIDLVATLSFYADAMM 309


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 211 RIFLYIVGKSYD-TLNVLVISMISLLHIVCILTFKCLTYYLR 333
           RIF   + + Y+  +NV +  +I+L H +C+L F    +Y+R
Sbjct: 47  RIFSKFLTEYYERNVNVQLFGIITLSHFMCLLFFIADFFYIR 88


>AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine
           receptor, class u protein24 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 250 LNVLVISMISLLHIVCILTFKCLTYYLR 333
           +N+ +  +I+L H++C+L F    +YLR
Sbjct: 62  VNIQLFGVITLSHVMCLLFFTTELFYLR 89


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 256  VLVISMISLLHIVCILTFKCLTYY 327
            +L+ + I LL ++C++ F C  YY
Sbjct: 2132 ILLAASIFLLCVICLIGFSCFCYY 2155


>Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical
           protein F13A7.2 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 91  FSKYTLPTYLFYTYNQYEYCNYLLDVI 11
           F KY  PT+ FY YN Y     ++++I
Sbjct: 80  FCKYIGPTFCFYCYNLYTAFGIVVNLI 106


>Z83119-2|CAB05579.2|  608|Caenorhabditis elegans Hypothetical
           protein R05H10.2 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 343 DVKNVNNKSNI*MLKYTLYVEVKSSILQVHLMYRNFFPQYT 221
           +VKN   K +  ++   +  +VK SI +VH     F P++T
Sbjct: 514 NVKNTTEKMSERVVNEKIRQQVKQSIGEVHTAGMKFLPKFT 554


>AF043697-5|AAB97557.2|  230|Caenorhabditis elegans Hypothetical
           protein F56C11.5 protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 214 IFLYIVGKSYDTLNVLVISMI-SLLHIVCILTFKCLTYYLRF 336
           IFL  V   Y   N+L+  ++  +L ++C L   C T Y  F
Sbjct: 83  IFLLFVAIFYQIGNLLIPHIVMQILLVLCFLGLTCATLYALF 124


>Z81119-7|CAB03338.2|  310|Caenorhabditis elegans Hypothetical
           protein T10H4.9 protein.
          Length = 310

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 100 SIFFSKYTLPTYLFYTYNQYEYCNYLLDVIYNF 2
           + F++  TLP++  Y YN  ++  Y  D+ + F
Sbjct: 126 AFFWASATLPSFYLYVYNDCKF--YFADIFWVF 156


>U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 22 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 94  FFSKYTLPTYLFYTYNQYEYCN 29
           FFS+  L     Y Y+ Y+YCN
Sbjct: 73  FFSRIILHGLDLYNYSVYDYCN 94


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 234 KKLRYIKCTCNIDDFTSTYSVYFNIQMFDLLFTFLT 341
           +K  ++K   + D F ST  + F ++ FDL + FLT
Sbjct: 195 RKCNFVKLLGD-DSFISTEDIEFILKNFDLKYGFLT 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,100,283
Number of Sequences: 27780
Number of extensions: 140491
Number of successful extensions: 332
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)