Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C20
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   1.4  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        25   7.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.2  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   7.2  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 358 DASAKPFSKSLIAI--PLIFCSGCGNWK*TSSTRFIKGIADDS 236
           D  A PF K+L +   P    S  GN+K   +T F KG++ D+
Sbjct: 465 DKQASPFVKNLSSTSSPFSQSSAFGNFKFGQATSFDKGLSTDA 507


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 7   KAGAPRVAASKLWIPRVQNRTRALSHSFEHLISACVLKC 123
           K   PR AA  L + RV +    +S+   HL+  CV  C
Sbjct: 38  KGNTPREAAL-LILKRVNSANPTVSYLALHLLDICVKNC 75


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 243 SAIPLIKRVEEVYFQFPQPEQKIKGIAIKDLE 338
           S++PL +RVEEV F    PE+ I+ +++  +E
Sbjct: 9   SSVPL-RRVEEVQFGILSPEE-IRSMSVAKIE 38


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 226 FVHFPDDTTIIVVDRQ 179
           FV FP+D T+  VDRQ
Sbjct: 758 FVEFPNDPTLADVDRQ 773


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -2

Query: 295 CGNWK*TSSTRFIKGIADDSMTRFVHFPDDTTIIVVD----RQSHFWIAYGNNAYNSIKI 128
           C   K +S    I+  + D+    V  P  T  +       R  HFW+ +G  ++ S++I
Sbjct: 241 CRGSKPSSIFDIIRQESSDNKNESVELPLHTHFVAKKQGRIRDRHFWLLHGLKSHGSLEI 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,042
Number of Sequences: 5004
Number of extensions: 47124
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)