Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_C19
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 0.93
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 27 2.1
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 27 2.1
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 27 2.8
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 27 2.8
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 2.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 26 4.9
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc... 25 6.5
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 8.6
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 8.6
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 0.93
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 186 NNWHGAHSVYIPPTYYTSPQYVYIN 260
N+WHG S PPT +P Y Y++
Sbjct: 580 NDWHGNPSTVPPPTNPYNPGYPYMD 604
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 562 TVELIILTGFICSPSLAKVDTISQGILNTFSFP 464
T E I + F+ SL D ++QG L T SFP
Sbjct: 244 TGENIEMEDFVLYESLGLKDLVNQGKLETISFP 276
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 575 IRRTDCGVDYIDRFHLFPVFSKSRYNFTRYSQY 477
+RR+ GVD+ DR +L VFSK + QY
Sbjct: 460 VRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQY 492
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 213 YIPPTYYTSPQYVYINQYRNSDSRY 287
Y+P T + +P++ I+++RN+D Y
Sbjct: 224 YVPLTSFLNPKHQKISRFRNTDLLY 248
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 480 LRIPCEIVSTFAKDGEQMKPVNIIN 554
+R PCE + FA G+ +NII+
Sbjct: 224 VRCPCETIECFALQGDHCSVMNIIS 248
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 545 IDRFHLFPVFSKSRYNFTRYS-QYVFFSVFCY 453
ID+ +P F + RYNF + Y +SV C+
Sbjct: 356 IDKQVSYPAFLRMRYNFNQDDVDYQLYSVVCH 387
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 75 SNPSFPTYTSSNNYNKAPHHPXXXX---XXXXXXXXPMHNNNWHGAHSVYIPPTYYTSPQ 245
SN ++P + NNY K+P+ P H+ +VY PP Y + Q
Sbjct: 177 SNVAYPP--NYNNYLKSPYQQPTNFPPEIQYNYSHSPQHSIQEAEEAAVYGPPVYRSGYQ 234
Query: 246 YVYINQYRNSDS 281
+Y N N+DS
Sbjct: 235 ILYNN---NTDS 243
>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
Rec25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 372 NNRHSNNVHDSDCVIVPYYKELIQSVDLHSGYL 274
N ++ + + VI+ Y+EL+Q VDL S L
Sbjct: 54 NTDQNHQNQNQEGVIIEIYQELLQKVDLISSEL 86
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 420 YCQD*NCYLADMIFYCNNRHSNNVHDSDC--VIVPYYKELIQSV 295
YCQ N LA ++ YC + + C I YY ++I +
Sbjct: 300 YCQAMNIVLAALLVYCTEEQAYFLFSQLCEFYIPGYYAKIIHGL 343
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 240 PQYVYINQYRNSDSRYGDLLTGLALYNM 323
P+ +N + +S Y DLLT YN+
Sbjct: 99 PENHAVNSFNEEESNYEDLLTPSDAYNL 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,920
Number of Sequences: 5004
Number of extensions: 39767
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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