Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C19
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    29   2.2  
01_06_1082 + 34399798-34399914,34400548-34400829,34401197-344016...    28   5.1  
08_02_1624 - 28334067-28335851                                         27   8.9  

>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
            9863016-9863674,9863749-9863852,9863950-9864192,
            9864262-9864376,9864696-9864909,9864995-9865511,
            9866439-9866448,9867363-9867551,9867755-9868084,
            9868639-9868872,9869303-9869743
          Length = 1171

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 267  YIDLCI-HTEAMYSMSVVCIHCARRASYCCAWVYYNQCLYYMNY 139
            Y D C+ +     S   +C +C R+  + C WV   QC+   NY
Sbjct: 909  YCDTCLLYRPPRASHCSICNNCVRKFDHHCPWV--GQCIGLRNY 950


>01_06_1082 +
           34399798-34399914,34400548-34400829,34401197-34401633,
           34401800-34401959,34402034-34402147
          Length = 369

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 192 WHGAHSVYIPPTYYTSPQYVYINQYRN 272
           +HG + V++PP YY    Y  ++Q ++
Sbjct: 204 FHGLNQVFVPPAYYARGCYFTLSQTKS 230


>08_02_1624 - 28334067-28335851
          Length = 594

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 563 DCGVDYIDRFHLFPVFSKSRYNFTRYSQYVFFSVFCYFQSTCS 435
           D  V Y DR   FP+F+ +RY     SQ    +V CY   +CS
Sbjct: 514 DASVVYPDRVPHFPLFAGARYRLD-VSQR--RNVACYISHSCS 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,877
Number of Sequences: 37544
Number of extensions: 214976
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)