Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C19
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    30   1.5  
AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family ...    30   1.5  
AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical ...    30   1.5  
U97009-10|AAC69033.1|  533|Caenorhabditis elegans Udp-glucuronos...    28   4.6  

>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 554 VDYIDRFHLFPVFSKSRYNFTRYSQYVFFSVFCYFQSTC 438
           V+   R    PV ++S Y FT+Y+ Y+F S     Q  C
Sbjct: 311 VNITSRSKGIPVHARSGYIFTKYTCYLFISFHSLLQPLC 349


>AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family
           protein 30 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 81  PSFPTYTSSNNYNKAPHHPXX-XXXXXXXXXXPMHNNNWHGAHSVYIPPTYYT-SPQYVY 254
           PS P Y+S N Y + P HP             PM        +S Y  PT+ + SP+ VY
Sbjct: 249 PSSPLYSSQNQY-QYPFHPYSPFDSSIPYPYSPMD-------YSYYFNPTFQSFSPENVY 300

Query: 255 INQYRN 272
            ++ RN
Sbjct: 301 FDENRN 306


>AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.5 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 81  PSFPTYTSSNNYNKAPHHPXX-XXXXXXXXXXPMHNNNWHGAHSVYIPPTYYT-SPQYVY 254
           PS P Y+S N Y + P HP             PM        +S Y  PT+ + SP+ VY
Sbjct: 249 PSSPLYSSQNQY-QYPFHPYSPFDSSIPYPYSPMD-------YSYYFNPTFQSFSPENVY 300

Query: 255 INQYRN 272
            ++ RN
Sbjct: 301 FDENRN 306


>U97009-10|AAC69033.1|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein11 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 399 YLADMIFYCNNRHSNNVHDSDCV-IVPYYKELIQSVDLHSGYLNFYIDLCIHTEA 238
           + + M F    ++ N+V +     +VPY+K+L++   ++    N Y+D  + T A
Sbjct: 214 FFSKMAFRGMAQYQNDVIEKAAGHVVPYWKDLVKEAPVYMTNSNPYLDFAVPTTA 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,938,815
Number of Sequences: 27780
Number of extensions: 219751
Number of successful extensions: 698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)