Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C17
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    32   0.067
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    28   0.82 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   5.8  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    25   5.8  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   7.7  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   7.7  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 31.9 bits (69), Expect = 0.067
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = -1

Query: 161  AFGNSSSTYVPIFSTSGSLLQSRGAGSPWRTIT-----SRQNAAIALSSTARDTPACS 3
            A G +S T   +  T+G++  + G+G+ W T T     +R  + I +S TA   PACS
Sbjct: 1070 AQGTTSGTVEIVVPTAGTVTSTTGSGTSWFTTTVPATGTRSGSVIVVSPTA---PACS 1124


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 248 DRSNPVIVTLRVMMECTVARPSRTMNTNFAFGNSSSTYV-PIFSTSGSLLQSRGAGSPWR 72
           ++  PV+VT    M    +RP  T  T     + SS    PI ++S       GA  P +
Sbjct: 196 EKDEPVVVTEEKTMVSPPSRPDSTSTTKSKTSSISSARARPIRASSRPTASKLGASRPQK 255

Query: 71  TITSRQNAAI 42
               + NA I
Sbjct: 256 LGIKKANADI 265


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 60  GGDSAPRGASAAALQQGPARA---EDGHVRARAVPE 158
           G    P+GAS   L + P+RA   EDG+V   A PE
Sbjct: 203 GSLKLPKGASLEDLSRSPSRAVLNEDGNVDECAPPE 238


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 31  LDNAIAAFCLEVIVRHGEPAPRLCNK 108
           LDN+     LE++V   E AP +C K
Sbjct: 276 LDNSARQAALELLVCFSEGAPAMCRK 301


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 243 VEPGYSHLTGDDGVHGGASVAHHEHELRIREQLEHVRAHLQHERVLVAEPRRWL 82
           V P Y  L G D +     V    H   I + LE+V+  L H +    +  +W+
Sbjct: 77  VIPAYDLLKGRDDIQAVGEVLVPAHHCIIGKSLENVQKILSHPQAF-GQCSKWI 129


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 7   QAGVSRAVLDNAIAAFCLEVIVRHGEPAPR 96
           ++ V+ A   NA AAF    IV+H E A R
Sbjct: 349 RSNVTAAAAANAAAAFASASIVKHQETARR 378


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 151 FPNAKFVFMVRDGRATVHS----IITRKVTITGFDLSSYRQCLSKWNHAVELMYQQCKSL 318
           FP AK V  +R G+ T H     +    + +  F LS  R+ +S+   A+      CKS 
Sbjct: 73  FPKAKVVKALRGGQTTFHGPGQILAYPIIDLKSFGLSP-REYVSRLEQAI---IATCKSF 128

Query: 319 GPARCLTVRYEELVLRPRDTLRGV 390
           G  +  T +   + +   D +  +
Sbjct: 129 GIEKAHTTKNTGVWVTENDKIAAI 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,517
Number of Sequences: 5004
Number of extensions: 31560
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)