Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C17
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   2.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   3.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   3.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.5  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -2

Query: 145 RARTCPSSARAGPCCRAAALAPRGALSP 62
           RA TCP     G         P+G  +P
Sbjct: 71  RAYTCPICGACGDIAHTVKYCPKGTKNP 98


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 82  EPAPRLCNKDPLVLKMGTY 138
           EP+P  C K+P +  +GT+
Sbjct: 81  EPSPPFCEKNPKLGILGTH 99


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 82  EPAPRLCNKDPLVLKMGTY 138
           EP+P  C K+P +  +GT+
Sbjct: 82  EPSPPFCEKNPKLGILGTH 100


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 271 KWNHAVELMYQQ 306
           KWNH VE+M ++
Sbjct: 100 KWNHFVEIMIKK 111


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 271 KWNHAVELMYQQ 306
           KWNH VE+M ++
Sbjct: 100 KWNHFVEIMIKK 111


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 331 CLTVRYEELVLRPRDTLRGVSQF 399
           C  V +  LVLRP D + G+ +F
Sbjct: 705 CYLVTFA-LVLRPTDIVCGIQRF 726


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,909
Number of Sequences: 438
Number of extensions: 2391
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)