Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C16
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    33   0.027
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   0.78 
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    27   1.0  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   5.5  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   7.3  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    24   9.6  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 32.7 bits (71), Expect = 0.027
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 21  MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 155
           MFGK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 1   MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  CSGRSSFYCLSLCASAFKAD 81
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 168 HGALTLNSNGTSGAGVKVPFAGNDQNIVSAIGSLDLTNRQKLGAATAGVALD-NVNGHGV 344
           HG     +NG+    V V FA N+ +I+S+  +  L N+ K+    A + +   ++ +G 
Sbjct: 106 HGVNEDPANGSGAGSVGVFFALNNPSIISSDFAHLLFNQGKILGRNALIRVAIKLSANG- 164

Query: 345 SLTDTHIPGFGDKVTAAG 398
            L D H+ G G K+  +G
Sbjct: 165 -LYDIHVGG-GSKICISG 180


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 306 AGVALDNVNGHGVSLTDTHIPG 371
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199



 Score = 24.2 bits (50), Expect = 9.6
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 150 RVRRDAHGALTLNSNGTSGAGVKVPFAGNDQNIVSAI-GSLDLTNRQKLGAATAGVALDN 326
           R+ RD    +  N +GTSGA   + F G  + +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 327 V 329
           +
Sbjct: 500 L 500


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 12  YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 113
           +T++FG IVFL  +     +  R    +E VY I
Sbjct: 93  WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 238 SLPAKGTLTPAPEV 197
           SLPA GT TP+P V
Sbjct: 725 SLPAAGTATPSPVV 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,977
Number of Sequences: 5004
Number of extensions: 35226
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)